Jatropha Genome Database

JcCA0153501.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0153501.20 + phase: 0 /pseudo/partial
         (588 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02270                                                             98   3e-20

>KJC_c02270 
          Length = 1615

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 218/273 (79%), Gaps = 1/273 (0%)
 Strand = Plus / Minus

                                                                        
Query: 115  attggtcatcttcttgagaagaatcgatggatgaatgagtcaattactgcccttgccatt 174
            |||||||||||||| ||| |||||||||||||||||||||| ||||| ||||||  ||||
Sbjct: 1430 attggtcatcttctagaggagaatcgatggatgaatgagtccattacagcccttctcatt 1371

                                                                        
Query: 175  ggactctgtactggggttattatactcctaactactcaaggaaa-aagttcacacctttt 233
            ||  | || ||||||||| |||| || || | || |   || || ||| || || |||||
Sbjct: 1370 ggtttatgcactggggttgttattctgctgattagtggtgggaagaagctcgcatctttt 1311

                                                                        
Query: 234  tctattcgatgaacatcttttctttatatatgttcttccacctatcatttttaatgccgg 293
              | |||   ||  ||||||||||||||||| |||| || ||||| || |||||||| ||
Sbjct: 1310 agtcttcagcgaggatcttttctttatatatcttctgccgcctattatatttaatgcggg 1251

                                                                        
Query: 294  gttccaggttaaaaagaagcagttttttagaaactttatgacaatcgtgttatttggtgc 353
            ||| ||||| ||||||||||| || ||| | || || || || ||| || ||||||||||
Sbjct: 1250 gtttcaggtgaaaaagaagcaattctttcgtaatttcatcactatcatgctatttggtgc 1191

                                             
Query: 354  tgttgggactttaatatcctttatcatcatatc 386
            | |||| || |||||||||| | ||||||||||
Sbjct: 1190 tattggcacattaatatcctgtttcatcatatc 1158