Jatropha Genome Database

JcCA0153501.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0153501.10 - phase: 0 /pseudo/partial
         (506 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04054                                                            973   0.0  

>KJC_c04054 
          Length = 995

 Score =  973 bits (491), Expect = 0.0
 Identities = 505/507 (99%), Gaps = 2/507 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaggggtgagtttgggagcatgtctaggaaagggttcgatgtgaaatttggttatggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 atgaggggtgagtttgggagcatgtctaggaaagggttcgatgtgaaatttggttatggg 570

                                                                       
Query: 61  atgcgatccaggtctcaaagagtggttcaagatagctcttttgtgcctgttgatgcattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atgcgatccaggtctcaaagagtggttcaagatagctcttttgtgcctgttgatgcattt 510

                                                                       
Query: 121 aatcagagctgttgggctaacatgccgcccgagcttttgagggatgtactaatgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 aatcagagctgttgggctaacatgccgcccgagcttttgagggatgtactaatgagaatt 450

                                                                       
Query: 181 gaggcatcggagtgtacttggccatctcggaagaatgtggttgcttgtgctggtgtatgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gaggcatcggagtgtacttggccatctcggaagaatgtggttgcttgtgctggtgtatgc 390

                                                                       
Query: 241 agaaattggagggagattatg-aagaaattgtgaaaactctggaggtttctggcaaattg 299
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agaaattggagggagattatgaaagaaattgtgaaaactctggaggtttctggcaaattg 330

                                                                       
Query: 300 acgtttccgatatccttgaagcagccaggtcccagggattcccttcttcagtgctacatc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 acgtttccgatatccttgaagcagccaggtcccagggattcccttcttcagtgctacatc 270

                                                                       
Query: 360 aaacgaaatcgtagcaaccaaacatattatctgtacctcagcttaaaccaagcttcaaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 aaacgaaatcgtagcaaccaaacatattatctgtacctcagcttaaaccaagcttcaaac 210

                                                                       
Query: 420 gatgatggtaagtttcttcttgctgcacggaggtgcaggaggtcctacttgcacagatta 479
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 209 gatgatggtaagtttcttcttgctgcacggaggtgcaggagg-cctacttgcacagatta 151

                                      
Query: 480 cattatctctttaaactgtgatgatgt 506
           |||||||||||||||||||||||||||
Sbjct: 150 cattatctctttaaactgtgatgatgt 124