Jatropha Genome Database

JcCA0153311.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0153311.10 + phase: 0 
         (942 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07843                                                             80   1e-14
KJC_c11167                                                             52   2e-06

>KJC_c07843 
          Length = 658

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 109/132 (82%)
 Strand = Plus / Plus

                                                                       
Query: 92  atggtcatggttcttggagttctgttcccaagctagcaggtctgcaaaggtgtggaaaga 151
           |||| ||||| | |||||| ||||| ||||||| ||| ||| ||||||| ||||||||||
Sbjct: 245 atggccatggctgttggagctctgtccccaagcaagccggtttgcaaagatgtggaaaga 304

                                                                       
Query: 152 gttgcagactaagatggataaactacttgagaccagatctaaaaagaggttcatttacag 211
           | || ||| |||| ||||| || ||||||||||| ||| |||| |||||  ||||| || 
Sbjct: 305 gctgtagattaaggtggattaattacttgagacctgatttaaagagaggcacattttcac 364

                       
Query: 212 cacaagaagaga 223
            |||||||||||
Sbjct: 365 aacaagaagaga 376


>KJC_c11167 
          Length = 639

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 32/34 (94%)
 Strand = Plus / Plus

                                             
Query: 289 ggtagaactgacaatgaggtcaagaatttctgga 322
           |||||||||||||||||| ||||||||| |||||
Sbjct: 222 ggtagaactgacaatgagatcaagaattactgga 255