Jatropha Genome Database
- JcCA0152881.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0152881.20 + phase: 0 /pseudo
(1530 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c11030 123 1e-27
KJC_c01055 109 2e-23
>KJC_c11030
Length = 600
Score = 123 bits (62), Expect = 1e-27
Identities = 368/470 (78%), Gaps = 15/470 (3%)
Strand = Plus / Minus
Query: 504 ttgcacgaacctattggtgttgcaggacaaattattccgtggaattttccttttctcatg 563
||||| ||||||||||| |||||||| ||||||||||| |||||||||||| || || ||
Sbjct: 509 ttgcatgaacctattggagttgcagggcaaattattccatggaattttcctcttatcttg 450
Query: 564 tatgcttggaagatttgccctgcattagcatgtgctaatggagtttttctaaagactgca 623
| ||||||||| || | ||||||||||| |||| |||| || | || || || |||
Sbjct: 449 tttgcttggaaagttggtcctgcattagcttgtggtaatactattgtactgaaaacagca 390
Query: 624 gagcaaacaccactttctgctctttatgtgacaaaattattgcatgaagctggc-ttcct 682
|| || ||||| ||| ||||||| |||| ||| | || ||||| |||||| |||||
Sbjct: 389 gaacagacacctcttactgctctctatgcaggaaagctcttccatgatgctggccttcct 330
Query: 683 cctggtgttctaaatgtggtttctggctttggtcctactgctggtgcatctctttgtagt 742
|| |||||||| ||||| ||||| |||| |||||| ||||||||| || ||||| |||
Sbjct: 329 ccaggtgttctgaatgtagtttcaggctatggtccaactgctggttcagctcttgccagt 270
Query: 743 catatgggtgttgacaag-------------gatcaactgagactggtaagaaaatactt 789
|| |||| ||| |||||| ||||||||||||| || ||| || ||
Sbjct: 269 cacatggatgtagacaagatttctttcacaggatcaactgagacaggcaaggttatcctc 210
Query: 790 gaaatggcggcaatgagcaacctcaagtcagtgactttagagcttggaggaaaatctcct 849
||| |||| || | || || || ||| |||| || ||||| ||||||||||| || |||
Sbjct: 209 gaattggctgctaaaagtaatcttaagccagttacattagaacttggaggaaa-tcacct 151
Query: 850 tttattatatgtgaggatgctgatatcgatcaggctgtggagcttgcagattttgcattg 909
|| || |||| || ||||||||||| || ||||||||||||||||| | ||||| |||
Sbjct: 150 ttcatagtatgcgaagatgctgatattgacaaggctgtggagcttgcacactttgccttg 91
Query: 910 ttctttaaccagggtcaatgatgttgtgctgggtctcgtacatttgtaca 959
|||||||| ||||| ||||| |||||||||||||||||||| | ||||||
Sbjct: 90 ttctttaatcagggccaatgttgttgtgctgggtctcgtacgtatgtaca 41
>KJC_c01055
Length = 1668
Score = 109 bits (55), Expect = 2e-23
Identities = 194/239 (81%), Gaps = 1/239 (0%)
Strand = Plus / Minus
Query: 492 catgtgcaaaccttgcacgaacctattggtgttgcaggacaaattattccgtggaatttt 551
||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||||||
Sbjct: 1185 catgtgcaaacattgcacgaaccgattggtgttgcaggtcagattattccatggaatttc 1126
Query: 552 ccttttctcatgtatgcttggaagatttgccctgcattagcatgtgctaatggagttttt 611
||| |||| |||||||||||||| || | || ||||| ||||||| ||| ||| ||
Sbjct: 1125 cctcttctgatgtatgcttggaaagttggaccggcattggcatgtggcaatacggttgtt 1066
Query: 612 ctaaagactgcagagcaaacaccactttctgctctttatgtgacaaaattattgcatgaa 671
| ||||| |||||||| |||||| | || ||| ||||||| | || |||| |||||
Sbjct: 1065 attaagacagcagagcagacaccattgtccgctttttatgtatctaagctatttcatgag 1006
Query: 672 gctgg-cttcctcctggtgttctaaatgtggtttctggctttggtcctactgctggtgc 729
||||| ||||| |||||| | |||||||||||||| ||||| || |||||||||||
Sbjct: 1005 gctggacttccagaaggtgttttgaatgtggtttctggttttggcccaactgctggtgc 947
Score = 91.7 bits (46), Expect = 5e-18
Identities = 130/158 (82%)
Strand = Plus / Minus
Query: 805 agcaacctcaagtcagtgactttagagcttggaggaaaatctccttttattatatgtgag 864
||||| || ||| |||| ||||| || |||||||| ||||| ||||||||| | || |||
Sbjct: 858 agcaatcttaagccagtaactttggaacttggagggaaatcgccttttattgtttgcgag 799
Query: 865 gatgctgatatcgatcaggctgtggagcttgcagattttgcattgttctttaaccagggt 924
||||||||| | || |||||||| |||||||| | ||||| || |||||||| ||||||
Sbjct: 798 gatgctgatgttgaccaggctgttgagcttgctcactttgctttattctttaatcagggt 739
Query: 925 caatgatgttgtgctgggtctcgtacatttgtacatga 962
||||| || |||||||| || || |||| ||| |||||
Sbjct: 738 caatgctgctgtgctggttcccgcacatatgttcatga 701
Score = 85.7 bits (43), Expect = 3e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 194 catgttgctgaaggtgatgccgaaggcataaagcgggcagtctctgctgcccgcaaggcg 253
||||||||||||||||||| |||| |||||| | ||||| |||||||| ||||||||
Sbjct: 1485 catgttgctgaaggtgatgttgaagacataaatagagcagtgtctgctgctcgcaaggca 1426
Query: 254 tttgatgaagggccatggccaaa 276
|| ||||||||||||||||||||
Sbjct: 1425 ttcgatgaagggccatggccaaa 1403
Score = 63.9 bits (32), Expect = 1e-09
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 1408 gctgcaattccttttggtgggtataagatgagcagtcaaggcagagaaaagggtatttat 1467
||||| |||||||||||||| ||||||||||| | || || ||||| |||||||||||
Sbjct: 260 gctgcgattccttttggtggatataagatgagtggacatggaagagagaagggtatttac 201
Query: 1468 ggccttagcaactacttgca 1487
| |||||||| ||||||||
Sbjct: 200 agtcttagcaattacttgca 181
Score = 56.0 bits (28), Expect = 3e-07
Identities = 145/184 (78%)
Strand = Plus / Minus
Query: 1079 agaagatacttacatacataatatctggtgttgaaagtggtgctacactagaaattggag 1138
|||||||||| | ||||||| ||||| |||||||||| |||||||| ||| |||||
Sbjct: 584 agaagatactaaggtacataaggtctggcattgaaagtggagctacacttgaagctggag 525
Query: 1139 gtgatagatgcggctctaagggctattatgttcaaccaactattttttcaaatgttaagg 1198
| ||||||| || | |||||||||||| | || || || |||| |||||||||||||
Sbjct: 524 gagatagatttggtaccaagggctattatatccagcccacagttttctcaaatgttaagg 465
Query: 1199 acaacatgttgatagcacaagatgagatctttggcccagtacagactatcttaaaataca 1258
| | ||| | ||||| |||||||||| || || ||||| ||| | ||||| |||| ||
Sbjct: 464 atgatatgcttatagcgaaagatgagatattcggtccagtgcagtccatcttgaaattca 405
Query: 1259 agga 1262
||||
Sbjct: 404 agga 401