Jatropha Genome Database

JcCA0152031.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0152031.20 - phase: 0 
         (690 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07491                                                            950   0.0  

>KJC_c07491 
          Length = 542

 Score =  950 bits (479), Expect = 0.0
 Identities = 497/501 (99%), Gaps = 4/501 (0%)
 Strand = Plus / Plus

                                                                       
Query: 99  aaaatcagtaggagacgataatgttttgcgatttctggattcgatggatagttatttgac 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46  aaaatcagtaggagacgataatgttttgcgatttctggattcgatggatagttatttgac 105

                                                                       
Query: 159 tcttttcgattctttatctcatacacttcgtcagggttggctggagttggctggtgctcg 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 106 tcttttcgattctttatctcatacacttcgtcagggttggctggagttggctggtgctcg 165

                                                                       
Query: 219 gcattcaatgggggcttcacgcatcaatagcgctttactggaccttaaagtccactctgc 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gcattcaatgggggcttcacgcatcaatagcgctttactggaccttaaagtccactctgc 225

                                                                       
Query: 279 ttctactttattgcaagtatcagaaggtcatgattccatggaggagcaaccgcacttcat 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 ttctactttattgcaagtatcagaaggtcatgattccatggaggagcaaccgcacttcat 285

                                                                       
Query: 339 cttgcggaaatggggatccttggattgttctaggtatcaaaattccaaagagggtgaatt 398
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 cttgcggaaatggggatccttggattgttctaggtatcaaaattccaaagagggtgaatt 345

                                                                       
Query: 399 gcaggcgaaacctgggagtccacgtctacggcaacggggcaattcccaggtttctgaaga 458
           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||   ||
Sbjct: 346 gcaggcgaaacctgggagtccacgtctacggcaacggggcaattcccagg-ttct---ga 401

                                                                       
Query: 459 gataacatctccgaagcaagctgcgctaaaggtcgatgaccaagttcaaaaggagcgatc 518
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 gataacatctccgaagcaagctgcgctaaaggtcgatgaccaagttcaaaaggagcgatc 461

                                                                       
Query: 519 aagatctctatctgtatttggtactcttgtttccccaaagcttcgagatgcccagctatc 578
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 aagatctctatctgtatttggtactcttgtttccccaaagcttcgagatgcccagctatc 521

                                
Query: 579 atttgagacagcactggagac 599
           |||||||||||||||||||||
Sbjct: 522 atttgagacagcactggagac 542