Jatropha Genome Database

JcCA0151201.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0151201.10 + phase: 0 /partial
         (414 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05735                                                            702   0.0  
KJC_s13126                                                             98   2e-20

>KJC_c05735 
          Length = 992

 Score =  702 bits (354), Expect = 0.0
 Identities = 354/354 (100%)
 Strand = Plus / Minus

                                                                       
Query: 3   acattgtgcacccagtgaaccgagtatactgcagcagctagaagaagttgttgtcatgcc 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acattgtgcacccagtgaaccgagtatactgcagcagctagaagaagttgttgtcatgcc 296

                                                                       
Query: 63  aaactaccatcgtttgtttccaggtggtgctcggaagttatttaatatctttggcagcag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aaactaccatcgtttgtttccaggtggtgctcggaagttatttaatatctttggcagcag 236

                                                                       
Query: 123 ctactgtgacacagttgctaagcgacttgcctgctggatctccatccaaaagtgtgacaa 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctactgtgacacagttgctaagcgacttgcctgctggatctccatccaaaagtgtgacaa 176

                                                                       
Query: 183 agatggtgatgataggctccgggtatgccattcagcgtgtcagtcgtataacttagcatg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 agatggtgatgataggctccgggtatgccattcagcgtgtcagtcgtataacttagcatg 116

                                                                       
Query: 243 cggtgcgtcactcgactgctcagaccaaaccctctttagcagtgaagaggaaggtgaggg 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 cggtgcgtcactcgactgctcagaccaaaccctctttagcagtgaagaggaaggtgaggg 56

                                                                 
Query: 303 tcagtgcaccggctctggagagatgaagttatcatggttgaatcgtctggggat 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  tcagtgcaccggctctggagagatgaagttatcatggttgaatcgtctggggat 2


>KJC_s13126 
          Length = 73

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 56/57 (98%), Gaps = 1/57 (1%)
 Strand = Plus / Minus

                                                                    
Query: 148 cttgcctgctggatctccatccaaaagtgtgacaaagatggtgatgataggctccgg 204
           ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 56  cttgcctgctggatctccatccaaa-gtgtgacaaagatggtgatgataggctccgg 1