Jatropha Genome Database

JcCA0151141.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0151141.10 - phase: 0 /partial
         (1565 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09605                                                            569   e-162

>KJC_c09605 
          Length = 685

 Score =  569 bits (287), Expect = e-162
 Identities = 308/311 (99%), Gaps = 3/311 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1258 cagctggaa-tcagaagtgtcggtgcaaagg-cagatgctaaataaaaaaga-tgctgaa 1314
            ||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 682  cagctggaagtcagaagtgtcggtgcaaaggacagatgctaaataaaaaagaatgctgaa 623

                                                                        
Query: 1315 ctgttggctgccaaagaggagatcaaccgacttgaaactgaattttcctcatataaagtt 1374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622  ctgttggctgccaaagaggagatcaaccgacttgaaactgaattttcctcatataaagtt 563

                                                                        
Query: 1375 cgtgctcatgcacttctccagagaaaagattcagagctagctgcagcaatggactctgaa 1434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562  cgtgctcatgcacttctccagagaaaagattcagagctagctgcagcaatggactctgaa 503

                                                                        
Query: 1435 caacttagagtcttggaggaagcactaaaagaggctgaaaaagaagtgtcaataatatct 1494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502  caacttagagtcttggaggaagcactaaaagaggctgaaaaagaagtgtcaataatatct 443

                                                                        
Query: 1495 gcagaaagggacaaggctcttcaggatcttcaagatgcattggctcatcgtgataaagag 1554
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442  gcagaaagggacaaggctcttcaggatcttcaagatgcattggctcatcgtgataaagag 383

                       
Query: 1555 ctcgctgagag 1565
            |||||||||||
Sbjct: 382  ctcgctgagag 372