Jatropha Genome Database

JcCA0150341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0150341.10 + phase: 0 /partial
         (336 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06126                                                            531   e-151

>KJC_c06126 
          Length = 658

 Score =  531 bits (268), Expect = e-151
 Identities = 321/336 (95%), Gaps = 2/336 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgccagacaatatccattatgatggacatggccacttctggattgcattacccatggaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||
Sbjct: 449 atgccagacaatatccattatgatggacatggccacttctggattgcatctgccatggaa 390

                                                                       
Query: 61  atcacaacattttggaaggcagtattcaaatatccttttgtccgaaagcttgcaggaatt 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 389 atcacaacattttggaaggcagtattcaaatatccttttatccgaaagcttgcaggaatt 330

                                                                       
Query: 121 gtttcgaagcacatacgaaatataggtgatacaggaaaaaatggaggagtttttgtggtg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 329 gtttcgaagcacatacgaaatataggtgatacaggaaaaaatggaggagtttttatggtg 270

                                                                       
Query: 181 gatttggaagggaaactgatttcccattactatgatcctgagttaaaattgatttccagt 240
           ||||||||||||||||||| |||  |||||||||||||||||||||||| |||||| | |
Sbjct: 269 gatttggaagggaaactga-ttcttattactatgatcctgagttaaaatagatttctact 211

                                                                       
Query: 241 ggtgtaaaaattggaaatcatctatactgtggttctatcatcgatccctatattcttcgt 300
           ||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 210 ggtgt-aaaattggaaatcatctatactgtggttctatcatctatccctatattattcgt 152

                                               
Query: 301 ctaaatttggctaagtatcctgcacttgccaatacc 336
           ||||||||||| ||||||||||||||||||||||||
Sbjct: 151 ctaaatttggccaagtatcctgcacttgccaatacc 116