Jatropha Genome Database

JcCA0149621.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0149621.10 + phase: 0 
         (1068 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00791                                                            121   4e-27

>KJC_c00791 
          Length = 1460

 Score =  121 bits (61), Expect = 4e-27
 Identities = 313/393 (79%), Gaps = 3/393 (0%)
 Strand = Plus / Minus

                                                                       
Query: 295 gatggtactggtgaacccttttttgttctgaattcagatgtcataagtgagtatccccta 354
           |||||| |||||||||| ||||||||||| ||    |||||||| ||||||||||| || 
Sbjct: 996 gatggttctggtgaaccattttttgttctcaacagtgatgtcatcagtgagtatccgctc 937

                                                                       
Query: 355 atggaaatgattgaatttcacaagggccatggtggacaagcttcaattatggtaactgag 414
           |  |||||||| || || ||||| | |||||| ||| | ||||| || ||||||||  ||
Sbjct: 936 aaagaaatgatagagttccacaaagcccatggaggagaggcttctataatggtaaccaag 877

                                                                       
Query: 415 gtgattgatccatcaaaatatggtgttgtggttatacgagaagctacagggatggtgcaa 474
           |||  ||| ||||||||||||||||| ||||||||   |||| | || |||| |||  | 
Sbjct: 876 gtggatgagccatcaaaatatggtgtggtggttatggaagaatccactgggagggttgag 817

                                                                       
Query: 475 gaatttgctgagaaaccatcaacattttccagaaataaaatcaatgctggaatctacttg 534
             |||||  || ||||||  || ||||    |||| ||||||||||| ||||| ||  ||
Sbjct: 816 agatttgtagaaaaaccaaaaatatttgttggaaacaaaatcaatgcaggaatttatctg 757

                                                                       
Query: 535 ttgaatccatctattcttgatcaaattgaactcaaggctacctcaattgaaaaggaagtt 594
           || || |||||| | ||||||| ||||||||| | | | |||||||||||||| || || 
Sbjct: 756 ttaaacccatctgtccttgatcgaattgaactgaggcccacctcaattgaaaaagaggtc 697

                                                                       
Query: 595 tttccaagaattgcagaagacaaaaaactgtttgcaatg-tccttgcctggattttggat 653
           || ||||  ||||||| ||| ||||| || ||||||||| ||||| || || ||||||||
Sbjct: 696 ttcccaaatattgcaggagataaaaatctctttgcaatggtcctt-ccagg-ttttggat 639

                                            
Query: 654 ggatattggacagccaagagattacattgcagg 686
           ||| |||||||||||||||||||||||| ||||
Sbjct: 638 ggacattggacagccaagagattacattacagg 606