Jatropha Genome Database

JcCA0149451.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0149451.10 - phase: 0 /TE/pseudo/partial
         (623 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04540                                                            109   8e-24
KJC_s13972                                                             64   4e-10
KJC_c00066                                                             64   4e-10

>KJC_c04540 
          Length = 727

 Score =  109 bits (55), Expect = 8e-24
 Identities = 136/163 (83%)
 Strand = Plus / Plus

                                                                       
Query: 212 cacttaaaaactatttggacgctcaatactatggagaaattggtattggctcaccaccac 271
           |||| |||||||| || || ||||| || | ||| ||||||||||||||| ||||  | |
Sbjct: 251 cactaaaaaactacttagatgctcagtattttggtgaaattggtattggcacaccttccc 310

                                                                       
Query: 272 agaacttcactgtcatatttgacacaggaagttccaatctctggattccatcttcaaaat 331
           |||  |||||||| ||||||||||| |||||||| ||||||||| | || ||||||||||
Sbjct: 311 agactttcactgtgatatttgacacgggaagttctaatctctgggtaccctcttcaaaat 370

                                                      
Query: 332 gttatttttctcttgcctgttatttccattctaggtacaagtc 374
           ||||||| || ||||| || || |||||||| ||||| |||||
Sbjct: 371 gttatttctcgcttgcttgctacttccattccaggtataagtc 413


>KJC_s13972 
          Length = 522

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 134/168 (79%)
 Strand = Plus / Minus

                                                                       
Query: 205 atagtaccacttaaaaactatttggacgctcaatactatggagaaattggtattggctca 264
           |||||| |||| || |||||  |||| || || |||| ||| || |||||||||||  | 
Sbjct: 478 atagtatcactaaagaactacatggatgcccagtactttggtgagattggtattggtact 419

                                                                       
Query: 265 ccaccacagaacttcactgtcatatttgacacaggaagttccaatctctggattccatct 324
           || ||||| || |||||||| ||||||||||| || ||||| ||||| ||| | || |||
Sbjct: 418 cccccacaaaagttcactgtgatatttgacactggtagttctaatctatgggtgccctct 359

                                                           
Query: 325 tcaaaatgttatttttctcttgcctgttatttccattctaggtacaag 372
           || || || || |||||  ||||||| ||||||||||| | |||||||
Sbjct: 358 tccaagtgctacttttcagttgcctgctatttccattccaagtacaag 311


>KJC_c00066 
          Length = 1781

 Score = 63.9 bits (32), Expect = 4e-10
 Identities = 134/168 (79%)
 Strand = Plus / Plus

                                                                       
Query: 205 atagtaccacttaaaaactatttggacgctcaatactatggagaaattggtattggctca 264
           |||||| |||| || |||||  |||| || || |||| ||| || |||||||||||  | 
Sbjct: 337 atagtatcactaaagaactacatggatgcccagtactttggtgagattggtattggtact 396

                                                                       
Query: 265 ccaccacagaacttcactgtcatatttgacacaggaagttccaatctctggattccatct 324
           || ||||| || |||||||| ||||||||||| || ||||| ||||| ||| | || |||
Sbjct: 397 cccccacaaaagttcactgtgatatttgacactggtagttctaatctatgggtgccctct 456

                                                           
Query: 325 tcaaaatgttatttttctcttgcctgttatttccattctaggtacaag 372
           || || || || |||||  ||||||| ||||||||||| | |||||||
Sbjct: 457 tccaagtgctacttttcagttgcctgctatttccattccaagtacaag 504