Jatropha Genome Database

JcCA0149411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0149411.10 - phase: 0 /partial
         (738 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11698                                                            325   9e-89

>KJC_c11698 
          Length = 515

 Score =  325 bits (164), Expect = 9e-89
 Identities = 308/356 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcagcagtcctgaaggaagaatttaacattgatctgcgtgtcatgggaatcattggctca 60
           ||||||||||| ||||| ||||||||||||||| | ||||| |||||||||| ||| |||
Sbjct: 356 gcagcagtccttaaggaggaatttaacattgatttacgtgtaatgggaatcactggatca 297

                                                                       
Query: 61  agaagaatgcttttgagtgaagttggaattgacttgtcaagatggagagaacttgcaatg 120
           |||||||||||||||||||||| ||||||||| ||||| ||||||||||||||| ||| |
Sbjct: 296 agaagaatgcttttgagtgaagctggaattgatttgtcgagatggagagaacttacaaag 237

                                                                       
Query: 121 gagaatagtgaagtggctgacctggagaaattcacgcaccatattcggagaaaccatttt 180
           |||||| ||||||| |||||| ||||||| |||| ||||||| | |   |||| ||||||
Sbjct: 236 gagaatggtgaagttgctgacttggagaagttcatgcaccatgtgcatggaaatcatttt 177

                                                                       
Query: 181 attcccaataccgttttggtagattgcactgcagactctaagattgcaacttgttattat 240
           ||||| ||||| |||||||||||||| || ||||| |||||  ||||||    ||| |||
Sbjct: 176 attccaaatactgttttggtagattgtacagcagattctaatgttgcaagccattactat 117

                                                                       
Query: 241 gattggttacggaagggaattcatgtgattacccctaacaaaaaggcaaattctgggcca 300
           ||||||||||| || |||||||| ||||||||||| || ||||||||||||||||| |||
Sbjct: 116 gattggttacgaaaaggaattcacgtgattaccccaaataaaaaggcaaattctggacca 57

                                                                   
Query: 301 cttgatcagtatctaaagctgagagctcttcaacgtcaatcatatactcattactt 356
           |||||||||||| | ||||||||  |||||||||| ||||| ||||| ||||||||
Sbjct: 56  cttgatcagtatttgaagctgaggtctcttcaacgccaatcttatacacattactt 1