Jatropha Genome Database

JcCA0147671.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0147671.20 + phase: 0 
         (711 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04995                                                            644   0.0  

>KJC_c04995 
          Length = 658

 Score =  644 bits (325), Expect = 0.0
 Identities = 426/457 (93%), Gaps = 2/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 158 tgatatgccaaggtatcactggcaaaaatggcactttccacaccgagcaagcaatcgaat 217
           ||||||||||||||||||||||||||| |||  ||||| ||||||||||||| |||||||
Sbjct: 650 tgatatgccaaggtatcactggcaaaa-tggacctttc-acaccgagcaagccatcgaat 593

                                                                       
Query: 218 acggcaccaaaatggtgggaggtgtaacaccaaagaagggagggacagaacacttgggcc 277
           ||||||| || |||||||| || |||||||||||||||||||| ||||||||||||||||
Sbjct: 592 acggcactaagatggtggggggcgtaacaccaaagaagggaggaacagaacacttgggcc 533

                                                                       
Query: 278 ttcctgttttcaacacagttgcagaagcaaaggctgaaacgaaggctaatgcttcagtca 337
           | |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 532 tccctgttttcaacacagttgcagaagcaaaggctgaaacaaaagctaatgcttcagtca 473

                                                                       
Query: 338 tctatgttccgccaccatttgctgcagcagcaattatggaggcaacggaagcagagttag 397
           |||||||||| ||||||||||| |||||||||||||||||||||| |||||| |||||||
Sbjct: 472 tctatgttcccccaccatttgcagcagcagcaattatggaggcaatggaagcggagttag 413

                                                                       
Query: 398 atctggttgtgtgtattacggagggaatccctcaacatgatatggtacgtgtgaaggctg 457
           |||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct: 412 atcttgttgtgtgcattacagagggaattcctcaacatgatatggtacgtgtgaaggctg 353

                                                                       
Query: 458 cgcttaataaacaatccaaaactcggttgattggtccaaactgccctggtattattaagc 517
           | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct: 352 ctcttaataaacagtccaaaactcggttgattggtccaaactgccctggtatcattaaac 293

                                                                       
Query: 518 caggagaatgtaagattggcataatgcctgggtacatccataaacctggtcgcattggaa 577
           | || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 292 ctggggaatgtaagattggcataatgcctgggtacatacataaacctggtcgcattggaa 233

                                                
Query: 578 tcgtttccagatctggtactttgacctatgaagcggt 614
           | |||||  ||||||||||||||||||||||||||||
Sbjct: 232 tagtttctcgatctggtactttgacctatgaagcggt 196