Jatropha Genome Database

JcCA0146681.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0146681.10 + phase: 0 
         (747 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08576                                                            745   0.0  
KJC_c07876                                                            117   4e-26

>KJC_c08576 
          Length = 397

 Score =  745 bits (376), Expect = 0.0
 Identities = 397/400 (99%), Gaps = 3/400 (0%)
 Strand = Plus / Plus

                                                                       
Query: 265 gatattatggagaacgttgaaaaaagaccattttatttgtatagtaagccccaaattact 324
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gatattatggagaacgttgaaaaaagaccattttatttgtatagtaagccccaaattact 60

                                                                       
Query: 325 agaaatgttgaggcttatagggatgctttagaaggattgaattcaattattgggtatgca 384
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agaaatgttgaggcttatagggatgctttagaaggattgaattcaattattgggtatgca 120

                                                                       
Query: 385 attaaggctaataataacttgaaggttttggagcatttgaggcagttgggttgtggggct 444
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attaaggctaataataacttgaaggttttggagcatttgaggcagttgggttgtggggct 180

                                                                       
Query: 445 gtccttgttagtggtaatgagcttagactggctcttcgcgctggattcgaccccaaaagg 504
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gtccttgttagtggtaatgagcttagactggctcttcgcgctggattcgaccccaaaagg 240

                                                                       
Query: 505 tgtatttttaatggaaatgggaagcttttggaggatttggttttagctgctcaagaaggt 564
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgta-ttttaatggaaatgggaagcttttggaggatttggttttagctgctcaagaaggt 299

                                                                       
Query: 565 gtttttgttaatgtggatagtgaatttgatttagagaatattgtagcagctgctagaatt 624
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gtttttg-taatgtggatagtgaatttgatttagagaatattgtagcagctgctagaatt 358

                                                   
Query: 625 gctggcgaaaaggttaacgttttacttcgaattaatccag 664
           ||||||| ||||||||||||||||||||||||||||||||
Sbjct: 359 gctggcg-aaaggttaacgttttacttcgaattaatccag 397


>KJC_c07876 
          Length = 491

 Score =  117 bits (59), Expect = 4e-26
 Identities = 73/75 (97%), Gaps = 2/75 (2%)
 Strand = Plus / Minus

                                                                       
Query: 606 tgtagcagctgctagaattgctggcgaaaaggttaacgttttacttcgaattaatccaga 665
           ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 489 tgtagcagctgctagaattgctggcgaaa-ggttaacgttt-acttcgaattaatccaga 432

                          
Query: 666 tgttgaccctcaggt 680
           |||||||||||||||
Sbjct: 431 tgttgaccctcaggt 417