Jatropha Genome Database

JcCA0146311.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0146311.10 + phase: 0 /TE/pseudo/partial
         (1004 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08276                                                            377   e-104

>KJC_c08276 
          Length = 494

 Score =  377 bits (190), Expect = e-104
 Identities = 227/238 (95%), Gaps = 1/238 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaactatttcccgaggatatttgcttcttgatacaactaagaagatatgggatgcggct 60
           |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct: 237 ccaactatttcccgaggatatttgcttcttgatacagctaagaagatatgggatgctgct 178

                                                                       
Query: 61  tcactgacgtattcacaaactggaaactatgctcagaggtatgaattgcgacagaaagtt 120
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 tcacagacgtattcacaaactggaaactatgctcagaggtatgaattgcgacagaaagtt 118

                                                                       
Query: 121 catgaaaccaagcagggagatctgactatcgctcagtattttgctaaacttagtgagtta 180
           |||||||||||||||||||||||||| |||||||||||||||||   |||||||| ||||
Sbjct: 117 catgaaaccaagcagggagatctgaccatcgctcagtattttgc-ggacttagtgggtta 59

                                                                     
Query: 181 tggcagaaactggattattatctagactttcaagcaagatgtactgatgatgcgactc 238
           |||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 58  tggcaggaactagattattatcaagactttcaagcaagatgtactgatgatgcgactc 1