Jatropha Genome Database

JcCA0145861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0145861.10 - phase: 0 
         (1257 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12029                                                            829   0.0  

>KJC_c12029 
          Length = 432

 Score =  829 bits (418), Expect = 0.0
 Identities = 432/434 (99%), Gaps = 2/434 (0%)
 Strand = Plus / Plus

                                                                       
Query: 365 gaggtaaaaatagtaaagaggacactttgaatgatttgcaaggagcaaatgtttgcttct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gaggtaaaaatagtaaagaggacactttgaatgatttgcaaggagcaaatgtttgcttct 60

                                                                       
Query: 425 ctgatgtgaccaatttagatattttagataaatcattgaatgatttaggtgtttcaattg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctgatgtgaccaatttagatattttagataaatcattgaatgatttaggtgtttcaattg 120

                                                                       
Query: 485 atgttgtagtgtcatgccttgctagtcgttctggtggaattaaagattcatggaaaattg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgttgtagtgtcatgccttgctagtcgttctggtggaattaaagattcatggaaaattg 180

                                                                       
Query: 545 attatgaggcaacaaagaatagtcttgttgctggaagaaataatggcgctaaccattttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attatgaggcaacaaagaatagtcttgttgctggaagaaataatggcgctaaccattttg 240

                                                                       
Query: 605 tattgctttctgcaatatgtgtgcaaaaacccctacttgaatttcagcgagcgaaactga 664
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 -attgctttctgcaatatgtgtgcaaaaacccctacttgaatttcagcgagcgaaactga 299

                                                                       
Query: 665 aatttgaggctgatttaatgaaagaagcagaagaggacaatggatttagttatagcattg 724
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 300 aatttgaggctgatttaatgaaagaagcagaagaggacaatggatttag-tatagcattg 358

                                                                       
Query: 725 tgaggccaactgcattttttaagagcttaggaggtcaggttgaattggttaaagatggaa 784
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tgaggccaactgcattttttaagagcttaggaggtcaggttgaattggttaaagatggaa 418

                         
Query: 785 agccttatgtgatg 798
           ||||||||||||||
Sbjct: 419 agccttatgtgatg 432