Jatropha Genome Database
- JcCA0144441.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0144441.10 - phase: 0
(1101 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00163 963 0.0
KJC_s19719 355 1e-97
>KJC_c00163
Length = 1650
Score = 963 bits (486), Expect = 0.0
Identities = 486/486 (100%)
Strand = Plus / Plus
Query: 535 ggcattggagctggtttggaatccatgacaattaatcaaatggcttgggatggagatgtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggcattggagctggtttggaatccatgacaattaatcaaatggcttgggatggagatgtg 676
Query: 595 aatccaaaagtaaaaatcttcgagaaggctcaaaattgtcttctgcccatgggtgttact 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 aatccaaaagtaaaaatcttcgagaaggctcaaaattgtcttctgcccatgggtgttact 736
Query: 655 tcagaaaatgttgcccatcgttttggagtgactagacaggagcaggatcaggctgctgtt 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 tcagaaaatgttgcccatcgttttggagtgactagacaggagcaggatcaggctgctgtt 796
Query: 715 gagtctcataggaaggctgctgcggctaccgctactggcaaattcaaggacgaaatcatc 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 gagtctcataggaaggctgctgcggctaccgctactggcaaattcaaggacgaaatcatc 856
Query: 775 cctgtggctaccaagattgtggacccaaaaactggtgatgagaaacctgtcacaatctca 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 857 cctgtggctaccaagattgtggacccaaaaactggtgatgagaaacctgtcacaatctca 916
Query: 835 gttgatgatgggattcgccctaacacatcattgtcagatctagcaaaattgaagcctgta 894
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 917 gttgatgatgggattcgccctaacacatcattgtcagatctagcaaaattgaagcctgta 976
Query: 895 tttaagaaagatggaacaaccactgctgggaattctagccaaataactgacggtgctggg 954
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 977 tttaagaaagatggaacaaccactgctgggaattctagccaaataactgacggtgctggg 1036
Query: 955 gctgtgttgctcatgaaaagaagcgtggcaatgcgtaaagggctaccaatccttggtgtg 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1037 gctgtgttgctcatgaaaagaagcgtggcaatgcgtaaagggctaccaatccttggtgtg 1096
Query: 1015 ttcagg 1020
||||||
Sbjct: 1097 ttcagg 1102
Score = 950 bits (479), Expect = 0.0
Identities = 479/479 (100%)
Strand = Plus / Plus
Query: 1 atggagaaagcgatcaacaggcagcgagttcttctcgatcatctacgtccttcatcgtct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 atggagaaagcgatcaacaggcagcgagttcttctcgatcatctacgtccttcatcgtct 199
Query: 61 tcttcgcacaattatgagtcctctctttctgcatcggcttgcttggccggagacagtgcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tcttcgcacaattatgagtcctctctttctgcatcggcttgcttggccggagacagtgcc 259
Query: 121 gcctatcaaaggactgctgtgtttggggatgatgttgtgattgtggcagcttatagaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gcctatcaaaggactgctgtgtttggggatgatgttgtgattgtggcagcttatagaact 319
Query: 181 ccgttatgcaagtcaaagcgcggtggtttcaaggatacccatgctgatgatttacttgct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccgttatgcaagtcaaagcgcggtggtttcaaggatacccatgctgatgatttacttgct 379
Query: 241 cctgttttgaaggcattgatagagaaaacgaacttgaacgcaagtgaagtaggggatatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 cctgttttgaaggcattgatagagaaaacgaacttgaacgcaagtgaagtaggggatatt 439
Query: 301 gttgtgggcacagtgttggccccaggatctcaaagagcaagtgaatgtaggatggctgca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gttgtgggcacagtgttggccccaggatctcaaagagcaagtgaatgtaggatggctgca 499
Query: 361 ttctatgctggttttcctgaaactgtgcctgttaggactgttaacaggcaatgttcgtct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ttctatgctggttttcctgaaactgtgcctgttaggactgttaacaggcaatgttcgtct 559
Query: 421 gggcttcaggcagttgctgatgtggcagcagctatcaaagctgggttttatgacatcgg 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gggcttcaggcagttgctgatgtggcagcagctatcaaagctgggttttatgacatcgg 618
>KJC_s19719
Length = 406
Score = 355 bits (179), Expect = 1e-97
Identities = 179/179 (100%)
Strand = Plus / Minus
Query: 535 ggcattggagctggtttggaatccatgacaattaatcaaatggcttgggatggagatgtg 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ggcattggagctggtttggaatccatgacaattaatcaaatggcttgggatggagatgtg 160
Query: 595 aatccaaaagtaaaaatcttcgagaaggctcaaaattgtcttctgcccatgggtgttact 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 aatccaaaagtaaaaatcttcgagaaggctcaaaattgtcttctgcccatgggtgttact 100
Query: 655 tcagaaaatgttgcccatcgttttggagtgactagacaggagcaggatcaggctgctgt 713
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99 tcagaaaatgttgcccatcgttttggagtgactagacaggagcaggatcaggctgctgt 41
Score = 278 bits (140), Expect = 3e-74
Identities = 182/188 (96%), Gaps = 6/188 (3%)
Strand = Plus / Minus
Query: 297 tattgttgtgggc-acag-tgttggcccca-ggatctcaaaga-gcaa-gtgaatgtagg 351
||||||||||||| |||| ||||||||||| |||||||||||| |||| |||||||||||
Sbjct: 404 tattgttgtgggcgacaggtgttggccccacggatctcaaagaagcaaagtgaatgtagg 345
Query: 352 atggctgcattctatgctggttttcctgaaactgtgcctgttaggactgttaacaggcaa 411
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 344 atggctgcattctatgctggttt-cctgaaactgtgcctgttaggactgttaacaggcaa 286
Query: 412 tgttcgtctgggcttcaggcagttgctgatgtggcagcagctatcaaagctgggttttat 471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tgttcgtctgggcttcaggcagttgctgatgtggcagcagctatcaaagctgggttttat 226
Query: 472 gacatcgg 479
||||||||
Sbjct: 225 gacatcgg 218