Jatropha Genome Database
- JcCA0142891.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0142891.10 - phase: 0 /pseudo
(911 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00459 1415 0.0
KJC_s15443 135 2e-31
KJC_c00813 107 5e-23
KJC_c04006 50 1e-05
>KJC_c00459
Length = 1191
Score = 1415 bits (714), Expect = 0.0
Identities = 726/729 (99%), Gaps = 2/729 (0%)
Strand = Plus / Plus
Query: 183 gatttgttcttcacagcccaattttcagcctgaagcttgctccccatctagtacccacgt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 gatttgttcttcacagcccaattttcagcctgaagcttgctccccatctagtacccacgt 326
Query: 243 gttttctcaagggttttctggttataaccaaatgggttttgagcaaacaggttcaatagg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gttttctcaagggttttctggttataaccaaatgggttttgagcaaacaggttcaatagg 386
Query: 303 gcttaatcatcttaccccatctcagattctccaaatccaagcccaaattcacttccaaca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gcttaatcatcttaccccatctcagattctccaaatccaagcccaaattcacttccaaca 446
Query: 363 acaacaacagcaaattcctaatctttcttcaaattcacacttacttcataaccaaagact 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 acaacaacagcaaattcctaatctttcttcaaattcacacttacttcataaccaaagact 506
Query: 423 cagctacttggctccgaagcctgtttccatgaaacaatctgcctctccttcaaaaccaac 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 cagctacttggctccgaagcctgtttccatgaaacaatctgcctctccttcaaaaccaac 566
Query: 483 aaaactttacagaggagtaaggcaaagacattggggcaagtgggttgctgaaattagact 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aaaactttacagaggagtaaggcaaagacattggggcaagtgggttgctgaaattagact 626
Query: 543 ccctaaaaacagaacaagactctggcttggcacttttgacacagccgaagaagctgcctt 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ccctaaaaacagaacaagactctggcttggcacttttgacacagccgaagaagctgcctt 686
Query: 603 ggcttatgacaaggctgcttataagctgagaggagaatttgccaggcttaattttcctca 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 ggcttatgacaaggctgcttataagctgagaggagaatttgccaggcttaattttcctca 746
Query: 663 tcttcgccaccaaggggattttggcgattataagcccctccatgcctctgttgatgctaa 722
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 tcttcgccaccaaggggattttggcgattataagcccctccatgcctctgttgatgctaa 806
Query: 723 gctgcaagcaatttgtcagagcttggctacctcacaaaaaacgaggggaaaacaggagag 782
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 807 gctgcaagcaatttgtcagagcttggctacctcacaaaaa--caggggaaaacaggagag 864
Query: 783 tcaagttctgtttctgattcgaagaccaatctttcagctccaatgaaggccataaaggaa 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tcaagttctgtttctgattcgaagaccaatctttcagctccaatgaaggccataaaggaa 924
Query: 843 gaggattactctttgaaaggtgaactgaaaagggaaattgagaatcttggagctgaggac 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 gaggattactctttgaaaggtgaactgaaaagggaaattgagaatcttggagctgaggac 984
Query: 903 tatagggtg 911
|||||||||
Sbjct: 985 tatagggtg 993
Score = 234 bits (118), Expect = 3e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 atggcagcagctatagatatctataatagcaaaacagcaccagttttctctgttatggat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atggcagcagctatagatatctataatagcaaaacagcaccagttttctctgttatggat 144
Query: 61 ccctgtagagaagaattaatgaaagcgcttgaaccttttatgaaaagtgcttcaccaa 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ccctgtagagaagaattaatgaaagcgcttgaaccttttatgaaaagtgcttcaccaa 202
>KJC_s15443
Length = 509
Score = 135 bits (68), Expect = 2e-31
Identities = 75/76 (98%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 44 ttttctctgttatggatccctgtagagaagaattaatgaaagcgcttgaacc-ttttatg 102
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 6 ttttctctgttatggatccctgtagagaagaattaatgaaagcgcttgaacctttttatg 65
Query: 103 aaaagtgcttcaccaa 118
||||||||||||||||
Sbjct: 66 aaaagtgcttcaccaa 81
>KJC_c00813
Length = 1085
Score = 107 bits (54), Expect = 5e-23
Identities = 120/142 (84%)
Strand = Plus / Plus
Query: 473 caaaaccaacaaaactttacagaggagtaaggcaaagacattggggcaagtgggttgctg 532
||||||| || || || ||||||||||||||||| ||||||||||||| |||||||| |
Sbjct: 931 caaaacccactaagctctacagaggagtaaggcagcgacattggggcaaatgggttgccg 990
Query: 533 aaattagactccctaaaaacagaacaagactctggcttggcacttttgacacagccgaag 592
| || |||| || || ||| | ||| ||||||||||||| |||||||||||||| ||||
Sbjct: 991 agatccgactacccaagaaccgtacacgactctggcttggtacttttgacacagcagaag 1050
Query: 593 aagctgccttggcttatgacaa 614
|||| || || |||||||||||
Sbjct: 1051 aagccgctttagcttatgacaa 1072
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 77 taatgaaagcgcttgaaccttttatgaaaagtgct 111
||||| |||| ||||||||||||||||||||||||
Sbjct: 481 taatggaagcacttgaaccttttatgaaaagtgct 515
>KJC_c04006
Length = 936
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 490 tacagaggagtaaggcaaagacattggggcaagtggg 526
||||||||||| |||||||||| ||||||||| ||||
Sbjct: 458 tacagaggagtgaggcaaagaccttggggcaaatggg 494