Jatropha Genome Database

JcCA0142191.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0142191.20 - phase: 0 /pseudo/partial
         (327 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00773                                                            309   2e-84
KJC_s19315                                                            165   8e-41
KJC_c00670                                                             56   5e-08

>KJC_c00773 
          Length = 1304

 Score =  309 bits (156), Expect = 2e-84
 Identities = 156/156 (100%)
 Strand = Plus / Minus

                                                                       
Query: 172 cctaagtaccacgaaatgataataccaaaaataaaagaagggaagattgtttatgttgaa 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 cctaagtaccacgaaatgataataccaaaaataaaagaagggaagattgtttatgttgaa 167

                                                                       
Query: 232 gatattgccgacggtatagaaagcggtccggcggctgtggttggcgtattcagaggatgt 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 166 gatattgccgacggtatagaaagcggtccggcggctgtggttggcgtattcagaggatgt 107

                                               
Query: 292 aatatgggaaagcaagtggttaaagttgccgatgaa 327
           ||||||||||||||||||||||||||||||||||||
Sbjct: 106 aatatgggaaagcaagtggttaaagttgccgatgaa 71



 Score =  165 bits (83), Expect = 8e-41
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                       
Query: 89  gttgatttgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacag 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 gttgatttgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacag 470

                                  
Query: 149 gacttggatgcagctttgaaaag 171
           |||||||||||||||||||||||
Sbjct: 469 gacttggatgcagctttgaaaag 447


>KJC_s19315 
          Length = 535

 Score =  165 bits (83), Expect = 8e-41
 Identities = 83/83 (100%)
 Strand = Plus / Minus

                                                                       
Query: 89  gttgatttgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacag 148
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gttgatttgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaacag 371

                                  
Query: 149 gacttggatgcagctttgaaaag 171
           |||||||||||||||||||||||
Sbjct: 370 gacttggatgcagctttgaaaag 348



 Score = 79.8 bits (40), Expect = 4e-15
 Identities = 40/40 (100%)
 Strand = Plus / Minus

                                                   
Query: 172 cctaagtaccacgaaatgataataccaaaaataaaagaag 211
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  cctaagtaccacgaaatgataataccaaaaataaaagaag 1


>KJC_c00670 
          Length = 703

 Score = 56.0 bits (28), Expect = 5e-08
 Identities = 70/84 (83%)
 Strand = Plus / Minus

                                                                       
Query: 86  aaggttgatttgttgaagaacaagtttggattcgacgaggctttcaattacaatgaagaa 145
           |||||||| || |||| |||||||||||| ||||| |  ||||||||||| || || || 
Sbjct: 118 aaggttgacttattgacgaacaagtttggtttcgatgctgctttcaattataaagaggag 59

                                   
Query: 146 caggacttggatgcagctttgaaa 169
           || |||| ||||||||| ||||||
Sbjct: 58  caagactgggatgcagcattgaaa 35