Jatropha Genome Database
- JcCA0141551.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0141551.10 - phase: 2 /partial
(1930 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c06818 805 0.0
KJC_c07993 714 0.0
KJC_s17687 642 0.0
>KJC_c06818
Length = 422
Score = 805 bits (406), Expect = 0.0
Identities = 413/414 (99%), Gaps = 1/414 (0%)
Strand = Plus / Minus
Query: 1 aggtttaagcacagacagtttggctgatgctgggtaccctggggcagtatcacttggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 aggtttaagcacagacagtttggctgatgctgggtaccctggggcagtatcacttggtga 354
Query: 61 tgcagtttgcggcatggctgttgcttatatcactaagagggatttcttattttggttccg 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 353 tgcagtttgcggcatggctgttgcttatatcactaagagggatttct-attttggttccg 295
Query: 121 atctcacacagcgaaggagatcaaatggggtggtgcaaagcatcatccagaggacaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 atctcacacagcgaaggagatcaaatggggtggtgcaaagcatcatccagaggacaagga 235
Query: 181 cgatgggcagaggatgcatccacgctcttcattcaaggcattcttggaagtggtaaaaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 cgatgggcagaggatgcatccacgctcttcattcaaggcattcttggaagtggtaaaaag 175
Query: 241 ccgaagtataccatgggagaacgcagaaatggatgctattcattctttgcagcttattct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 ccgaagtataccatgggagaacgcagaaatggatgctattcattctttgcagcttattct 115
Query: 301 tcgagactcatttagggatgctgaagcaaccaattctaaggctgttacaaatgcacagct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tcgagactcatttagggatgctgaagcaaccaattctaaggctgttacaaatgcacagct 55
Query: 361 tggagatctggagttgcaagggatggatgaactcagctcagttgcaagagaaat 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 tggagatctggagttgcaagggatggatgaactcagctcagttgcaagagaaat 1
>KJC_c07993
Length = 429
Score = 714 bits (360), Expect = 0.0
Identities = 410/430 (95%), Gaps = 20/430 (4%)
Strand = Plus / Plus
Query: 1415 gatggttcactggagcttgagaaggccgaatttttcattgggaatgtcatagatgctgta 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggttcactggagcttgagaaggccgaatttttcattgggaatgtcatagatgctgta 60
Query: 1475 gttagccaagtgatgttactgctgagggaaagaaatctacaattgattcgtgatattcca 1534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gttagccaagtgatgttactgctgagggaaagaaatctacaattgattcgtgatattcca 120
Query: 1535 gaggaagtaaaatctctggctgtatacggtgatcaagtaagaattcaacaggtgttggct 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaggaagtaaaatctctggctgtatacggtgatcaagtaagaattcaacaggtgttggct 180
Query: 1595 gatttcttgttgaatatggttcgttgtgcaccatcttcagaaggttgggtagagattcat 1654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gatttcttgttgaatatggttcgttgtgcaccatcttcagaaggttgggtagagattcat 240
Query: 1655 gtttgcccaaaactgaagcagacctccgatgggctatctgttgtgcatatggaattc--- 1711
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gtttgccc-aaactgaagcagacctccgatgggctatctgttgtgcatatggaattcagt 299
Query: 1712 ----------------aggatggtttgccccggtgaaggtcttcctcctgaactagtcca 1755
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 gatgatatttttataaaggatggtttgccccggtgaaggtcttcctcctgaactagtcca 359
Query: 1756 ggacatgttccacagctgccgatggacgactcaagaaggcctaggactcagtatgtgcag 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ggacatgttccacagctgccgatggacgactcaagaaggcctaggactcagtatgtgcag 419
Query: 1816 gaaaattttg 1825
||||||||||
Sbjct: 420 gaaaattttg 429
>KJC_s17687
Length = 340
Score = 642 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Minus
Query: 1607 aatatggttcgttgtgcaccatcttcagaaggttgggtagagattcatgtttgcccaaaa 1666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 aatatggttcgttgtgcaccatcttcagaaggttgggtagagattcatgtttgcccaaaa 281
Query: 1667 ctgaagcagacctccgatgggctatctgttgtgcatatggaattcaggatggtttgcccc 1726
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 ctgaagcagacctccgatgggctatctgttgtgcatatggaattcaggatggtttgcccc 221
Query: 1727 ggtgaaggtcttcctcctgaactagtccaggacatgttccacagctgccgatggacgact 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220 ggtgaaggtcttcctcctgaactagtccaggacatgttccacagctgccgatggacgact 161
Query: 1787 caagaaggcctaggactcagtatgtgcaggaaaattttgaagcttatgcaaggtgaagtc 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 160 caagaaggcctaggactcagtatgtgcaggaaaattttgaagcttatgcaaggtgaagtc 101
Query: 1847 caatacatcagagagtcagaaagatgttatttcttagttatcctcgatcttcccctgtgt 1906
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 caatacatcagagagtcagaaagatgttatttcttagttatcctcgatcttcccctgtgt 41
Query: 1907 cagagaggtgctaaaagtgttgat 1930
||||||||||||||||||||||||
Sbjct: 40 cagagaggtgctaaaagtgttgat 17