Jatropha Genome Database

JcCA0141501.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0141501.10 + phase: 2 /partial
         (311 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07459                                                            484   e-137

>KJC_c07459 
          Length = 499

 Score =  484 bits (244), Expect = e-137
 Identities = 267/271 (98%), Gaps = 4/271 (1%)
 Strand = Plus / Minus

                                                                       
Query: 41  gacattaatgagaatatagagaagctggatacaagaggtcctgtttcaaaatatatccta 100
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 499 gacattaatgagaatatagagaagctggatacaagaggtcctgtttcaaa-tatatccta 441

                                                                       
Query: 101 ccagatgaaaacctaaggggaagccttactctgacctttgaagaggcgatgtctggagtt 160
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccagatgaaa-cctaaggggaagccttactctgacctttgaagaggcgatgtctggagtt 382

                                                                       
Query: 161 gcatgtgatcttgagtctcgtggctttcatgtattgtgtaaggctactgagaaggtagta 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcatgtgatcttgagtctcgtggctttcatgtattgtgtaaggctactgagaaggtagta 322

                                                                       
Query: 221 gggcatgtgaaaccatattcaataactgggagtttgccactgattcgagagttgcaagat 280
           |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||
Sbjct: 321 gggcatgtgaaaccatattcaataactgggagtttgc--ctgattcgagagttgcaagat 264

                                          
Query: 281 gaaggttttgatgttcaaactgctggctatg 311
           |||||||||||||||||||||||||||||||
Sbjct: 263 gaaggttttgatgttcaaactgctggctatg 233