Jatropha Genome Database

JcCA0140991.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140991.10 + phase: 0 
         (864 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11167                                                             52   2e-06
KJC_c07843                                                             50   9e-06

>KJC_c11167 
          Length = 639

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 53/62 (85%)
 Strand = Plus / Plus

                                                                       
Query: 301 tggtcaaagattgcacagcatttaccaggaagaactgataatgaaatcaagaattactgg 360
           ||||| |||||||| || || || || || |||||||| ||||| |||||||||||||||
Sbjct: 195 tggtccaagattgcgcaacacttgccgggtagaactgacaatgagatcaagaattactgg 254

             
Query: 361 ag 362
           ||
Sbjct: 255 ag 256


>KJC_c07843 
          Length = 658

 Score = 50.1 bits (25), Expect = 9e-06
 Identities = 49/57 (85%)
 Strand = Plus / Plus

                                                                    
Query: 291 gggtaacaggtggtcaaagattgcacagcatttaccaggaagaactgataatgaaat 347
           |||||||||||||||| | ||||||   || |||||||||||||| || ||||||||
Sbjct: 405 gggtaacaggtggtcacaaattgcagcacaattaccaggaagaaccgacaatgaaat 461