Jatropha Genome Database

JcCA0140901.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140901.10 + phase: 0 /pseudo/partial
         (299 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11101                                                            196   2e-50
KJC_c06689                                                             90   4e-18
KJC_c06118                                                             86   5e-17

>KJC_c11101 
          Length = 357

 Score =  196 bits (99), Expect = 2e-50
 Identities = 106/107 (99%), Gaps = 1/107 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtataaggatcgaggaggagttggtggtggttcatcgagatcggagatcgag-cgaaa 59
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 251 atgtataaggatcgaggaggagttggtggtggttcatcgagatcggagatcgagtcgaaa 310

                                                          
Query: 60  gcgcataaacgacgcgctagacaagcatctagagaagtcatcccctt 106
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 gcgcataaacgacgcgctagacaagcatctagagaagtcatcccctt 357


>KJC_c06689 
          Length = 435

 Score = 89.7 bits (45), Expect = 4e-18
 Identities = 57/61 (93%)
 Strand = Plus / Minus

                                                                       
Query: 235 gtcaagttccatattatgattatgcacttgatctgatattggatgttgaatcctctcatg 294
           |||||||||| ||||||||||||||||||||  |||| ||||||||||||||||||||||
Sbjct: 291 gtcaagttccttattatgattatgcacttgacttgattttggatgttgaatcctctcatg 232

            
Query: 295 g 295
           |
Sbjct: 231 g 231


>KJC_c06118 
          Length = 538

 Score = 85.7 bits (43), Expect = 5e-17
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                      
Query: 253 attatgcacttgatctgatattggatgttgaatcctctcatgg 295
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attatgcacttgatctgatattggatgttgaatcctctcatgg 496