Jatropha Genome Database

JcCA0140861.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140861.10 - phase: 0 /pseudo/partial
         (422 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09181                                                            678   0.0  

>KJC_c09181 
          Length = 657

 Score =  678 bits (342), Expect = 0.0
 Identities = 344/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 39  agctccaaatcttcccaaggtaactgctgttgttggactttggggatttactgctctttc 98
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agctccaaatcttcccaaggtaactgctgttgttggactttggggatttactgctctttc 329

                                                                       
Query: 99  tctagctgtcgtttcactgattatgttctacaggtgtagtagtagagatccaggtttcat 158
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctagctgtcgtttcactgattatgttctacaggtgtagtagtagagatccaggtttcat 269

                                                                       
Query: 159 caagagacttgaagatttgggtaaagatgcagatatcgaggatcctttattaaatattga 218
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 caagagacttgaagatttgggtaaagatgcagatatcgaggatcctttattaaatattga 209

                                                                       
Query: 219 tctgaactactcctctatatggatggggaattggtctcaactttgccctacctgcaagat 278
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 tctgaactactcctctatatggatggggaattggtctcaactttgccctacctgcaagat 149

                                                                       
Query: 279 aattagacctgttcgctccaagcattgctctacgtgtaagcgttgtgttgagcagtttga 338
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 aattagacctgttcgctccaagcattgctctacgtgtaagcgttgtgttgagcagtttga 89

                                                        
Query: 339 ccatcactgcccatggatatctaattgtgtggggaagaggaataa 383
           |||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 88  ccatcactgcccatggatatctaattgtgtggggaanaggaataa 44