Jatropha Genome Database

JcCA0140011.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140011.20 - phase: 0 
         (1038 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08297                                                            708   0.0  

>KJC_c08297 
          Length = 378

 Score =  708 bits (357), Expect = 0.0
 Identities = 378/381 (99%), Gaps = 3/381 (0%)
 Strand = Plus / Minus

                                                                       
Query: 421 ggtatccaagcaattagaaatgtggttgctactgtaggtgaatctaatgtctggttagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ggtatccaagcaattagaaatgtggttgctactgtaggtgaatctaatgtctggttagca 319

                                                                       
Query: 481 ggccattccctgggggcagcaatggcaatgctagctggaaagacaatggccaagacaggc 540
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggccattccctgggg-cagcaatggcaatgctagctggaaagacaatggccaagacaggc 260

                                                                       
Query: 541 gtcttaattcaagcctttctctttaattcaccattcttatccgcccccattgagagaatc 600
           |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 259 gtcttaattcaagcctttctctttaattcaccat-cttatc-gcccccattgagagaatc 202

                                                                       
Query: 601 aaagataagcgggtgaaacatgggttacggatcgcaggcagtgtgataacagcaggtctc 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagataagcgggtgaaacatgggttacggatcgcaggcagtgtgataacagcaggtctc 142

                                                                       
Query: 661 gcctttgctgcaactgtaaagaagaacaatcaaaacagtcgatctgttgatccattttcc 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gcctttgctgcaactgtaaagaagaacaatcaaaacagtcgatctgttgatccattttcc 82

                                                                       
Query: 721 gctttatctgcctggataccctccatttttgtgaatccaggcgatcacatttgctcagaa 780
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 81  gctttatctgcctggataccctccatttttgtgaatccaggcgatcacatttgctcagaa 22

                                
Query: 781 tatataggttattttgaacac 801
           |||||||||||||||||||||
Sbjct: 21  tatataggttattttgaacac 1