Jatropha Genome Database
- JcCA0140001.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0140001.20 - phase: 1 /partial
(350 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00082 694 0.0
KJC_c13280 375 e-104
KJC_c10088 313 2e-85
KJC_c01325 72 1e-12
>KJC_c00082
Length = 927
Score = 694 bits (350), Expect = 0.0
Identities = 350/350 (100%)
Strand = Plus / Plus
Query: 1 caagcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 caagcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgg 540
Query: 61 gtgctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gtgctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatct 600
Query: 121 acccaggtggaagctttgacccattgggtttagctgatgacccggaagcatttgctgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 acccaggtggaagctttgacccattgggtttagctgatgacccggaagcatttgctgagc 660
Query: 181 ttaaggtaaaggaaatcaagaatggtagattggctatgttctctatgtttggattctttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttaaggtaaaggaaatcaagaatggtagattggctatgttctctatgtttggattctttg 720
Query: 241 ttcaagccattgtgactggaaagggtccattggagaacttggctgaccacttggctgacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ttcaagccattgtgactggaaagggtccattggagaacttggctgaccacttggctgacc 780
Query: 301 cagtcaacaacaacgcctgggcttatgccacaaacttcgtccccggaaag 350
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 cagtcaacaacaacgcctgggcttatgccacaaacttcgtccccggaaag 830
>KJC_c13280
Length = 748
Score = 375 bits (189), Expect = e-104
Identities = 252/264 (95%), Gaps = 8/264 (3%)
Strand = Plus / Minus
Query: 1 caagcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 caagcttgatccatgctcaaagtatcttggctatttgggcttgccaggtagtgttgatgg 203
Query: 61 gtgctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gtgctgttgagggttacagagttgccggtggacctctcggtgaggtaacagacccaatct 143
Query: 121 acccaggtggaagctttgacccattgggtttagctgatgacccggaagcatttgctgagc 180
| |||||| |||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct: 142 a-ccaggt-gaagctttga-ccattgggtt--gctgatga-ccggaagcatttgctgagc 89
Query: 181 ttaaggtaaaggaaatcaagaatggtagattggctatgttctctatgtttggattctttg 240
| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 88 tcaaggtgaaggaaatcaagaatggtaggttggctatgttctctatgtttggattc-ttg 30
Query: 241 ttcaagccattgtgactggaaagg 264
||||||||| ||| ||||||||||
Sbjct: 29 ttcaagcca-tgttactggaaagg 7
>KJC_c10088
Length = 284
Score = 313 bits (158), Expect = 2e-85
Identities = 190/198 (95%), Gaps = 2/198 (1%)
Strand = Plus / Minus
Query: 154 ctgatgacccggaagcatttgctgagcttaaggtaaaggaaatcaa-gaatggtagattg 212
|||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||| |||
Sbjct: 284 ctgatgacccggaagcatttgctgagctcaaggtgaaggaaatcaacgaatggtaggttg 225
Query: 213 gctatgttctctatgtttggattctttgttcaagccattgtgactggaaagggtccattg 272
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 224 gctatgttctctatgtttggattctttgttcaagccattgttactggaaagggtccattg 165
Query: 273 gagaacttggctgaccacttggctgacccagtcaacaacaacgcctgggcttatgccaca 332
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 164 gagaacttggctgaccacttggccgaccctgtcaacaacaacgcctgggcttatgccac- 106
Query: 333 aacttcgtccccggaaag 350
||||||||||||||||||
Sbjct: 105 aacttcgtccccggaaag 88
>KJC_c01325
Length = 745
Score = 71.9 bits (36), Expect = 1e-12
Identities = 109/132 (82%), Gaps = 1/132 (0%)
Strand = Plus / Minus
Query: 134 ctttgacccattgggtttagctgatgacccggaagcatttgctgagcttaaggtaaagga 193
||||||||| |||| || || ||||| || || |||||||| ||| | ||||| || ||
Sbjct: 328 ctttgaccctctgggattggccgatgatcctgatgcatttgcagagttgaaggtgaaaga 269
Query: 194 aatcaagaatggtagattggctatgttctctatgtttggattctttgttcaagccattgt 253
|||||||||||| | ||||| ||||| || |||||||||||||| ||||| || |||||
Sbjct: 268 aatcaagaatggacgtttggcaatgtt-tccatgtttggattcttcgttcaggctattgt 210
Query: 254 gactggaaaggg 265
|||||||||||
Sbjct: 209 cactggaaaggg 198