Jatropha Genome Database

JcCA0140001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0140001.10 + phase: 0 /partial
         (804 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09700                                                            513   e-145

>KJC_c09700 
          Length = 482

 Score =  513 bits (259), Expect = e-145
 Identities = 266/267 (99%), Gaps = 1/267 (0%)
 Strand = Plus / Minus

                                                                       
Query: 539 taaatgatagtgtttttg-atgttgatgatgatgcaattcctctccaatttcgaaatgga 597
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 taaatgatagtgtttttgtatgttgatgatgatgcaattcctctccaatttcgaaatgga 414

                                                                       
Query: 598 tttacattcctgactcctgatgaacagggaataaatggagctttagaacgtgcatttaat 657
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tttacattcctgactcctgatgaacagggaataaatggagctttagaacgtgcatttaat 354

                                                                       
Query: 658 tactataggaataatcctgagggctggcaggagcttgttcagaaggacatgaatatagat 717
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tactataggaataatcctgagggctggcaggagcttgttcagaaggacatgaatatagat 294

                                                                       
Query: 718 ttcagttgggaatcttcagcgtcacagtatgaggatctctatgcaaattcagtggccaga 777
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ttcagttgggaatcttcagcgtcacagtatgaggatctctatgcaaattcagtggccaga 234

                                      
Query: 778 gcaagggcggcagcaagtcgtggggct 804
           |||||||||||||||||||||||||||
Sbjct: 233 gcaagggcggcagcaagtcgtggggct 207