Jatropha Genome Database

JcCA0139011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0139011.10 - phase: 0 /pseudo/partial
         (732 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02329                                                            977   0.0  

>KJC_c02329 
          Length = 1007

 Score =  977 bits (493), Expect = 0.0
 Identities = 500/501 (99%), Gaps = 1/501 (0%)
 Strand = Plus / Plus

                                                                        
Query: 1    gatcctgcctactacatactcaaagaagatgaatctccttgcattttcggtcccattgag 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508  gatcctgcctactacatactcaaagaagatgaatctccttgcattttcggtcccattgag 567

                                                                        
Query: 61   aagcagaggtggtcttatgcctgtgcaaagcaattgattgagaggcttatatatgccgag 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568  aagcagaggtggtcttatgcctgtgcaaagcaattgattgagaggcttatatatgccgag 627

                                                                        
Query: 121  ggtgcagagaatggccttgagtttaccattgtgagacctttcaactggattggacctagg 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628  ggtgcagagaatggccttgagtttaccattgtgagacctttcaactggattggacctagg 687

                                                                        
Query: 181  atggacttcattcctggaattgatggcccaagtgagggtgttcccagagttctagcatgc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688  atggacttcattcctggaattgatggcccaagtgagggtgttcccagagttctagcatgc 747

                                                                        
Query: 241  ttcagcaatgctctgctgcgccgtgaaccactcaagcttgtggatggtggacaatcccag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748  ttcagcaatgctctgctgcgccgtgaaccactcaagcttgtggatggtggacaatcccag 807

                                                                        
Query: 301  agaactttcgtttatatcaaggatgccattgaagctgttcttttgatgattgaaaatccg 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808  agaactttcgtttatatcaaggatgccattgaagctgttcttttgatgattgaaaatccg 867

                                                                        
Query: 361  gcccgggctagtggtcatatttttaatgttggaaatcctcacaatgaagttactgtcagg 420
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 868  g-ccgggctagtggtcatatttttaatgttggaaatcctcacaatgaagttactgtcagg 926

                                                                        
Query: 421  cagcttgcagaaatgatgacggaggtctattcaaaggtaagcggagaagctgctctggat 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927  cagcttgcagaaatgatgacggaggtctattcaaaggtaagcggagaagctgctctggat 986

                                 
Query: 481  gtaccaacagttgatatctcc 501
            |||||||||||||||||||||
Sbjct: 987  gtaccaacagttgatatctcc 1007