Jatropha Genome Database

JcCA0138571.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0138571.10 + phase: 0 /pseudo/partial
         (435 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08696                                                            381   e-105

>KJC_c08696 
          Length = 564

 Score =  381 bits (192), Expect = e-105
 Identities = 192/192 (100%)
 Strand = Plus / Plus

                                                                       
Query: 244 gtcgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 gtcgtggtagagttgcttctagggttagtgttctgtttttgggcagccttaactgtaccg 209

                                                                       
Query: 304 ggaaagttccgatccatacacccttattctgatgaaaataggatagtttctttacccgct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 ggaaagttccgatccatacacccttattctgatgaaaataggatagtttctttacccgct 269

                                                                       
Query: 364 aatatggacttcatggtctttaaccatcgtggcaaagtatttccttcggaaatggacatg 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aatatggacttcatggtctttaaccatcgtggcaaagtatttccttcggaaatggacatg 329

                       
Query: 424 aagttgaagcat 435
           ||||||||||||
Sbjct: 330 aagttgaagcat 341



 Score =  184 bits (93), Expect = 1e-46
 Identities = 118/128 (92%), Gaps = 10/128 (7%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgggctttggctttgcgattggcacttttggagttctgattctgggtcatgctacttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24  atgggctttggctttgcgattggcacttttggagttctgattctgggtcatgctacttat 83

                                                                       
Query: 61  tcaaccattcaa----------tcctgaagattatggaggaggaattttcaggacctcca 110
           ||||||||||||          ||||||||||||||||||||||||||||||||||||||
Sbjct: 84  tcaaccattcaatatagaggtctcctgaagattatggaggaggaattttcaggacctcca 143

                   
Query: 111 atgaatgt 118
           ||||||||
Sbjct: 144 atgaatgt 151