Jatropha Genome Database
- JcCA0138491.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0138491.10 + phase: 0 /partial
(1221 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03453 1439 0.0
KJC_c01917 234 4e-61
KJC_c08135 178 2e-44
>KJC_c03453
Length = 980
Score = 1439 bits (726), Expect = 0.0
Identities = 736/738 (99%), Gaps = 1/738 (0%)
Strand = Plus / Plus
Query: 470 cctgttttcaagcagtagtgaacaacttggatgatgcgcatgagcagattgacactgcaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cctgttttcaagcagtagtgaacaacttggatgatgcgcatgagcagattgacactgcaa 60
Query: 530 tttctactgctttgaaggaaagcaagcctgcttatattagcataagttgtaatttgcctg 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tttctactgctttgaaggaaagcaagcctgcttatattagcataagttgtaatttgcctg 120
Query: 590 gaattcctcatccaaccttcgctagggaacctgttccattctgtcttgctcctaatgtaa 649
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gaattcctcattcaaccttcgctagggaacctgttccattctgtcttgctcctaatgtaa 180
Query: 650 gcaaccagttgggattagaggcagctgttgaagcaactgctgcatttctgaataaagctg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 181 gcaaccagttgggattagaggcagctgttgaagcaactgctgcatttctgaataa-gctg 239
Query: 710 tgaaacctgtcatcgtagcaggacccaaattaagggtggcaaaggcgcagaaggcctttg 769
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 tgaaacctgtcatcgtagcaggacccaaattaagggtggcaaaggcgcagaaggcctttg 299
Query: 770 tagagctcgcggatgccagtgggtacccagttgctgttatgccctctggtaaagggctag 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tagagctcgcggatgccagtgggtacccagttgctgttatgccctctggtaaagggctag 359
Query: 830 tgccagagcatcatccacacttcattgggacttactggggtgctgttagcacaagctttt 889
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 tgccagagcatcatccacacttcattgggacttactggggtgctgttagcacaagctttt 419
Query: 890 gtggggagatagtggagtctgctgatgcctatatttttattggtcctatattcaatgact 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 gtggggagatagtggagtctgctgatgcctatatttttattggtcctatattcaatgact 479
Query: 950 acagctctgtcggatactccttgctgatcaataaggaaaaagcggtcatagtgcaggcta 1009
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 acagctctgtcggatactccttgctgatcaataaggaaaaagcggtcatagtgcaggcta 539
Query: 1010 atcgtgtggctattggcaatggtccttcctttggctgggtctttatgactgaatttttaa 1069
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 atcgtgtggctattggcaatggtccttcctttggctgggtctttatgactgaatttttaa 599
Query: 1070 gtgcattggccaagaaattgaggaagaatagcaccgccatggaaaattaccgacgtatct 1129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 gtgcattggccaagaaattgaggaagaatagcaccgccatggaaaattaccgacgtatct 659
Query: 1130 ttgtccctccaggtctccctctgaagagtgagaaagatgaacctcttagggtcaatgtac 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 ttgtccctccaggtctccctctgaagagtgagaaagatgaacctcttagggtcaatgtac 719
Query: 1190 tcttcaagcacattcagg 1207
||||||||||||||||||
Sbjct: 720 tcttcaagcacattcagg 737
>KJC_c01917
Length = 1155
Score = 234 bits (118), Expect = 4e-61
Identities = 391/482 (81%)
Strand = Plus / Plus
Query: 121 atcggcgtcagtgatgttttctcggtccctggagacttcaacttgacgcttttggatcat 180
||||| ||||||||||||||||| || || || ||||| ||| | || ||| | ||||||
Sbjct: 192 atcggtgtcagtgatgttttctctgttcccggtgactttaaccttactcttcttgatcat 251
Query: 181 ttgatagcagagcccgggctgaacttggtcggctgctgcaacgagctgaacgccggatat 240
|||| || ||||| ||| ||||| | |||| || || || ||||| || || ||||||
Sbjct: 252 ctgatcgctgagcctgggttgaacctcatcggatgttgtaatgagctcaatgcaggatat 311
Query: 241 gctgccgatgggtatgcacgtgccagaggcgtgggggcttgtgtagtgactttcactgtt 300
|||||||| || ||||| || | | ||||| || || ||||| || || || ||||||
Sbjct: 312 gctgccgacggttatgctcgatcgcgtggcgttggcgcgtgtgttgttacgtttactgtt 371
Query: 301 ggtggtcttagtgtgcttaacgcaattgctggtgcttatagtgagaatttgcctgtgatt 360
||||| |||||||| || || || |||||||| ||||||||||| ||||| || |||||
Sbjct: 372 ggtgggcttagtgttctcaatgcgattgctggagcttatagtgaaaatttaccggtgata 431
Query: 361 tgtattgtgggtggtcctaattctaatgattatgggactaacagaattttgcatcacact 420
||||| || ||||| ||||| || |||||||||||||||||||| ||| | ||||| |||
Sbjct: 432 tgtatcgttggtggacctaactccaatgattatgggactaacaggattctccatcatact 491
Query: 421 attggtttgcctgattttagtcaggagctcaggtgcttccagacagtcacctgttttcaa 480
||||| |||||||||||||| ||||| || ||||| |||||||| || ||||| || ||
Sbjct: 492 attgggttgcctgattttagccaggaactaaggtgtttccagactgttacctgcttccag 551
Query: 481 gcagtagtgaacaacttggatgatgcgcatgagcagattgacactgcaatttctactgct 540
|| || ||||| |||||||| ||||| ||||| || ||||| ||||| || || ||||||
Sbjct: 552 gctgtggtgaataacttggaagatgctcatgaacaaattgatactgctatatcgactgct 611
Query: 541 ttgaaggaaagcaagcctgcttatattagcataagttgtaatttgcctggaattcctcat 600
||||| ||||||||||||| |||| | || | || |||||||||||||| || ||||||
Sbjct: 612 ttgaaagaaagcaagcctgtttatctcagtgttagctgtaatttgcctgggatccctcat 671
Query: 601 cc 602
||
Sbjct: 672 cc 673
Score = 81.8 bits (41), Expect = 4e-15
Identities = 140/169 (82%), Gaps = 3/169 (1%)
Strand = Plus / Plus
Query: 802 gctgttatgccctctggtaaagggctagtgccagagcatcatccacacttcattgggac- 860
||||||||||| || | ||||||| | ||||| ||||| ||||| ||||||||||||||
Sbjct: 873 gctgttatgccatcagctaaagggtttgtgccggagcaccatccccacttcattgggact 932
Query: 861 ttactggggtgctgttagcacaagcttt-tgtggggagatagtggagtctgctgatgcct 919
||| ||||||||||| ||||| ||||| |||| ||||| ||||| ||||||||||| |
Sbjct: 933 ttattggggtgctgtgagcac-tgctttctgtgctgagatcgtggaatctgctgatgctt 991
Query: 920 atatttttattggtcctatattcaatgactacagctctgtcggatactc 968
| | ||| ||| ||||| || |||||||| |||||||| ||||||||
Sbjct: 992 acttgtttgctggacctatttttaatgactatagctctgttggatactc 1040
>KJC_c08135
Length = 379
Score = 178 bits (90), Expect = 2e-44
Identities = 124/130 (95%), Gaps = 4/130 (3%)
Strand = Plus / Minus
Query: 1081 aagaaatt-gaggaagaata-gcaccgccatggaaaatta-ccgacgtatctttgtccct 1137
|||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |
Sbjct: 379 aagaaattagaggaagaataagcaccgccatggaaaattaaccgacgtatctttgtcc-t 321
Query: 1138 ccaggtctccctctgaagagtgagaaagatgaacctcttagggtcaatgtactcttcaag 1197
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ccaggtctcctcctgaagagtgagaaagatgaacctcttagggtcaatgtactcttcaag 261
Query: 1198 cacattcagg 1207
||||||||||
Sbjct: 260 cacattcagg 251