Jatropha Genome Database

JcCA0137661.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0137661.20 - phase: 0 
         (1296 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04568                                                             92   4e-18

>KJC_c04568 
          Length = 884

 Score = 91.7 bits (46), Expect = 4e-18
 Identities = 76/86 (88%)
 Strand = Plus / Minus

                                                                       
Query: 646 aatatcaaagcagtcatcctggaccttttcgttgctggaagtgagacgtcatcaacaacc 705
           |||||||| ||||||||||||||  |||||||||| || |||||||| ||||||||||| 
Sbjct: 147 aatatcaaggcagtcatcctggatattttcgttgcgggtagtgagacatcatcaacaaca 88

                                     
Query: 706 gtagaatgggcaatgtcagaagtgct 731
           ||||||||||| ||||| ||| ||||
Sbjct: 87  gtagaatgggcgatgtccgaaatgct 62



 Score = 73.8 bits (37), Expect = 9e-13
 Identities = 88/105 (83%)
 Strand = Plus / Minus

                                                                       
Query: 129 ttataacttcttagacattgcttattcaccgtatgaagattactggagacagttgaggaa 188
           ||||||||||  ||||||||||| |||||| |||| |||||||||||||||| || | ||
Sbjct: 683 ttataacttcacagacattgctttttcaccatatgcagattactggagacagctgcgaaa 624

                                                        
Query: 189 aatttgcaccgtagaattgctaagtgcaaagcgtgtgcaatcatt 233
           ||| ||||   | ||||||||||| ||||| || ||||| |||||
Sbjct: 623 aatctgcatactcgaattgctaagcgcaaaacgcgtgcagtcatt 579