Jatropha Genome Database

JcCA0134821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0134821.10 - phase: 1 /partial
         (265 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00552                                                            521   e-148

>KJC_c00552 
          Length = 1714

 Score =  521 bits (263), Expect = e-148
 Identities = 263/263 (100%)
 Strand = Plus / Minus

                                                                        
Query: 3    agtcttattattcaaaagggatctatttctatttttacaaaaagtaatccaagatttttc 62
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1370 agtcttattattcaaaagggatctatttctatttttacaaaaagtaatccaagatttttc 1311

                                                                        
Query: 63   ttgttcctatataattctcatgtatatgaatacgaatcaatcctcttttttcttcgtaac 122
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1310 ttgttcctatataattctcatgtatatgaatacgaatcaatcctcttttttcttcgtaac 1251

                                                                        
Query: 123  caatcctttcatttacgatcaacattttctcgagtccttcttgaacgaatttatttctat 182
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1250 caatcctttcatttacgatcaacattttctcgagtccttcttgaacgaatttatttctat 1191

                                                                        
Query: 183  ggaaaaatagaacattttgcagaagtctttgctaatgattttcagactatcctatggttg 242
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1190 ggaaaaatagaacattttgcagaagtctttgctaatgattttcagactatcctatggttg 1131

                                   
Query: 243  gtcaagtatcctttcatgcatta 265
            |||||||||||||||||||||||
Sbjct: 1130 gtcaagtatcctttcatgcatta 1108