Jatropha Genome Database

JcCA0133521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0133521.10 + phase: 0 /partial
         (791 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08096                                                            254   3e-67

>KJC_c08096 
          Length = 335

 Score =  254 bits (128), Expect = 3e-67
 Identities = 163/168 (97%), Gaps = 5/168 (2%)
 Strand = Plus / Minus

                                                                       
Query: 379 ataaattca-tctaccattgatccagaaacatcaagaaagctttctgcaactgtgtctaa 437
           ||||||||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 335 ataaattcaatctaccat-gatccagaaacatca-gaaagctt-ctgcaactgtgtctaa 279

                                                                       
Query: 438 ctttgttttaacagagaagaaagaccaatgggagaaacctgtcatgttggatgctcctgt 497
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctt-gttttaacagagaagaaagaccaatgggagaaacctgtcatgttggatgctcctgt 220

                                                           
Query: 498 ctccggaggtgttcttgctgcagaagcaggtactctcacttttatggt 545
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 ctccggaggtgttcttgctgcagaagcaggtactctcacttttatggt 172