Jatropha Genome Database

JcCA0132271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0132271.10 + phase: 0 /partial
         (1548 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10131                                                            109   2e-23
KJC_c04088                                                             82   5e-15

>KJC_c10131 
          Length = 400

 Score =  109 bits (55), Expect = 2e-23
 Identities = 166/203 (81%)
 Strand = Plus / Minus

                                                                        
Query: 1297 aatccaagcttggattatgggttgaaaggtgctgaaatagctatggcttcatattgctca 1356
            ||||| || ||||||||||| || ||||| |||||||| || ||||||||||| || || 
Sbjct: 236  aatccgagtttggattatggattcaaaggagctgaaattgcaatggcttcatactgttct 177

                                                                        
Query: 1357 gaacttcaattcttggctaatcctgtaacttctcatgttcaaagtgctgagcagcataat 1416
            || ||||||||  | |||||||| || |||   ||||| |||||||| ||||||||||||
Sbjct: 176  gagcttcaatttcttgctaatccagttactagccatgtgcaaagtgcagagcagcataat 117

                                                                        
Query: 1417 caagatgttaactctcttggtttgatttcagcaagaaagagtgctgaagccattgaaatc 1476
            |||||||| |||||  | || || |||||  ||||||||| |   ||||| ||||| || 
Sbjct: 116  caagatgtgaactcattagggttaatttcttcaagaaagactcaagaagcgattgatatt 57

                                   
Query: 1477 ttgaagcttatgtctgcaacttt 1499
            ||||||||||||||| |||||||
Sbjct: 56   ttgaagcttatgtcttcaacttt 34


>KJC_c04088 
          Length = 617

 Score = 81.8 bits (41), Expect = 5e-15
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                        
Query: 1013 taagaacctctcctcaatggcttggtcctcaaattgaagttattcgagcagcaactcatt 1072
            ||||||| |||||||||||| | || |||||||| ||||||||||||    | ||| | |
Sbjct: 455  taagaacttctcctcaatggttaggccctcaaatcgaagttattcgattttctactaaat 514

                                                 
Query: 1073 ctattgaaagagagattaattctgtcaatgataatcc 1109
            | ||||||||||||||||| |||||||||||||||||
Sbjct: 515  caattgaaagagagattaactctgtcaatgataatcc 551