Jatropha Genome Database

JcCA0130881.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0130881.20 + phase: 0 /partial
         (606 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05612                                                            143   6e-34

>KJC_c05612 
          Length = 522

 Score =  143 bits (72), Expect = 6e-34
 Identities = 118/126 (93%), Gaps = 8/126 (6%)
 Strand = Plus / Minus

                                                                       
Query: 484 gttatgcgagttaacgataagaaagtcgaagcggac-acgttgtcttggggtgttaagtt 542
           ||||||||||||||||||||||| |||||||||||| |||||||||||||   |||||||
Sbjct: 522 gttatgcgagttaacgataagaa-gtcgaagcggactacgttgtcttggg---ttaagtt 467

                                                                       
Query: 543 ttccggtattgctt-ggacccatgacag-caaagggtttttctatagccgttatccacct 600
           | |||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 466 t-ccggtattgcttaggacccatgacagtcaaagggtttttctatagccgttatccacct 408

                 
Query: 601 cccaag 606
           ||||||
Sbjct: 407 cccaag 402