Jatropha Genome Database

JcCA0130881.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0130881.10 - phase: 0 
         (1008 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08991                                                            926   0.0  
KJC_c05724                                                             70   1e-11

>KJC_c08991 
          Length = 632

 Score =  926 bits (467), Expect = 0.0
 Identities = 481/483 (99%), Gaps = 2/483 (0%)
 Strand = Plus / Minus

                                                                       
Query: 471 gtggcaccgtgagatggaatggcttctgtgtgtcagtaattcc-atagtggagcttgttc 529
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 632 gtggcaccgtgagatggaatggcttctgtgtgtcagtaattccgatagtggagcttgttc 573

                                                                       
Query: 530 cgtcaatgcaagatttcccaagtggtgcaaccttt-gaggttatggtgcctcggcctcgc 588
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 572 cgtcaatgcaagatttcccaagtggtgcaaccttttgaggttatggtgcctcggcctcgc 513

                                                                       
Query: 589 tcagatctacatgtaaaccttccagcactcaagaagcttgatgccatgttgcttagcatt 648
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 tcagatctacatgtaaaccttccagcactcaagaagcttgatgccatgttgcttagcatt 453

                                                                       
Query: 649 cttgatgggttttgcaattcagatttcagttatgttgatagcaaggtaatggttgctgtt 708
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 cttgatgggttttgcaattcagatttcagttatgttgatagcaaggtaatggttgctgtt 393

                                                                       
Query: 709 ggcgatgaaacaaaatcatttcctttattttcatcttcttcaagacttccaattaatcag 768
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggcgatgaaacaaaatcatttcctttattttcatcttcttcaagacttccaattaatcag 333

                                                                       
Query: 769 gaagagaagtgctggcttccctttcccaaggttccccggaatggtttatctgaagataca 828
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gaagagaagtgctggcttccctttcccaaggttccccggaatggtttatctgaagataca 273

                                                                       
Query: 829 agaaagagattacagcaatgtagggaatgcacaaatcaaatacttaaggctgccatggca 888
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 agaaagagattacagcaatgtagggaatgcacaaatcaaatacttaaggctgccatggca 213

                                                                       
Query: 889 attaataacagtgtgttgagtgagatggaaattccaaatgcttacttggagagcttgccc 948
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 attaataacagtgtgttgagtgagatggaaattccaaatgcttacttggagagcttgccc 153

              
Query: 949 aag 951
           |||
Sbjct: 152 aag 150


>KJC_c05724 
          Length = 796

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 288 tttgtctgaggttgaaatgatgaaagagcgatttgctaagcttctgcttggagaagacat 347
           ||||||||| || ||||||||||||||| |||| |||||||||||| | ||||| |||||
Sbjct: 240 tttgtctgaagtggaaatgatgaaagagagattcgctaagcttctgttgggagaggacat 299

              
Query: 348 gtc 350
           |||
Sbjct: 300 gtc 302