Jatropha Genome Database

JcCA0127661.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0127661.10 - phase: 0 /pseudo
         (508 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12037                                                            517   e-147

>KJC_c12037 
          Length = 371

 Score =  517 bits (261), Expect = e-147
 Identities = 296/301 (98%), Gaps = 5/301 (1%)
 Strand = Plus / Minus

                                                                       
Query: 187 aaagctgttgatcagtatttagagcaaaggaaccttcaaatggaggttgaggtcgagacg 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 aaagctgttgatcagtatttagagcaaaggaaccttcaaatggaggttgaggtcgagacg 312

                                                                       
Query: 247 aggacacttgaagaagtgaatgaggtgttagattatacatcacaaacaaagacttccttg 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aggacacttgaagaagtgaatgaggtgttagattatacatcacaaacaaagacttccttg 252

                                                                       
Query: 307 acccggataatgttggataatatggttataccactgccaaatggggatgttgatgtatcc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 acccggataatgttggataatatggttataccactgccaaatggggatgttgatgtatcc 192

                                                                       
Query: 367 atgcttaaacaagctgtggagttgatcaatggaagatttgagactgaggcatcaggcaaa 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 191 atgcttaaacaagctgtggagttgatcaatggaagatttgagactgaggcatcaggc-aa 133

                                                                       
Query: 427 tgttaactcttgaaacagtgacacaaaattggacagactaggtagtaacctacatttcta 486
           |||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||
Sbjct: 132 tgtt-actcttgaaacagtg-cacaaaattggacagact-ggt-gtaacctacatttcta 77

            
Query: 487 g 487
           |
Sbjct: 76  g 76