Jatropha Genome Database

JcCA0127101.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0127101.10 - phase: 1 /partial
         (623 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09567                                                            121   2e-27

>KJC_c09567 
          Length = 585

 Score =  121 bits (61), Expect = 2e-27
 Identities = 279/348 (80%), Gaps = 4/348 (1%)
 Strand = Plus / Plus

                                                                       
Query: 37  ttgaaggtgatttttcgtgcacagtagaggttcagcgagcaattccaattttgaagaagg 96
           |||||||||| |||||||| ||| |||| |||||| |||| ||  | ||| | ||||| |
Sbjct: 118 ttgaaggtgacttttcgtgtacattagaagttcagagagccatatccattctaaagaaag 177

                                                                       
Query: 97  cctatggtgaccacatgcgtaaagttttgcatgttggccctgatacttgttcggtggttt 156
           | ||||| |||  |||||| |||||||||||||| ||||||||||||||||| ||||| |
Sbjct: 178 catatggggacagcatgcgcaaagttttgcatgtgggccctgatacttgttcagtggtct 237

                                                                       
Query: 157 ctttattgctgaaagaagaggaaactgaagcttggggtgtggaaccatatgatattgagg 216
           ||    || |||||||||| ||||||||||| |||||||| ||||| || ||||| ||||
Sbjct: 238 ctcagctgttgaaagaagaagaaactgaagcatggggtgttgaaccgtacgatatagagg 297

                                                                       
Query: 217 atgtggatagtcactgc-cgagcactagt-gcaaaagggcaatgtgcgtgttgccgatat 274
           |||  |||    |||||  ||   ||| | |||||  |||| ||| ||||| || |||||
Sbjct: 298 atgcagatgcaaactgcaagaattctattcgcaaa--ggcattgtccgtgtagctgatat 355

                                                                       
Query: 275 caagtttcctcttccttacaggccaaagtctttttctcttgtaattgtgtcagatgcatt 334
            ||||| |||||||| |||||  |||||||||||||||| || ||||||||||||||| |
Sbjct: 356 taagttccctcttccctacagatcaaagtctttttctctggtcattgtgtcagatgcact 415

                                                           
Query: 335 agactacttgtctccaaggtatctcaacagaacgcttcctgaattggc 382
            || ||| ||||||  | ||| || ||||| || ||||| ||||||||
Sbjct: 416 ggattacctgtctcagaagtacctgaacaggactcttccagaattggc 463