Jatropha Genome Database

JcCA0124371.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0124371.10 - phase: 0 
         (288 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01228                                                             72   8e-13

>KJC_c01228 
          Length = 980

 Score = 71.9 bits (36), Expect = 8e-13
 Identities = 81/96 (84%)
 Strand = Plus / Plus

                                                                       
Query: 171 aaactgtaaggaattggcagcacagcctgatgttgatggctttttagttggtggtgcttc 230
           |||||| || || ||||| ||||| || ||||||||||| ||||| || || || |||||
Sbjct: 654 aaactgcaaagagttggctgcacaaccagatgttgatggatttttggtcggcggagcttc 713

                                               
Query: 231 tctaaagccggagttcattgaaattatcaagtctgc 266
           | | ||||||||||||||||| || |||||||||||
Sbjct: 714 tttgaagccggagttcattgacataatcaagtctgc 749