Jatropha Genome Database

JcCA0122321.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122321.10 - phase: 2 /partial
         (1905 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01752                                                            100   2e-20
KJC_c07529                                                             94   1e-18
KJC_c04248                                                             64   1e-09

>KJC_c01752 
          Length = 1131

 Score = 99.6 bits (50), Expect = 2e-20
 Identities = 89/102 (87%)
 Strand = Plus / Minus

                                                                        
Query: 1757 tttggagaagttgttgcagtgactggcgatacaacaaatgatgccccagctcttcacaaa 1816
            ||||| ||||||||||| |||||||| |||   ||||||||||| ||||| |||||  ||
Sbjct: 914  tttggggaagttgttgctgtgactggtgatggtacaaatgatgctccagcacttcatgaa 855

                                                      
Query: 1817 gcagatattggtcttgcaatgggcattgccggaactgaggtg 1858
            ||||| ||||| ||||||||||||||||| ||||||||||||
Sbjct: 854  gcagacattgggcttgcaatgggcattgctggaactgaggtg 813


>KJC_c07529 
          Length = 497

 Score = 93.7 bits (47), Expect = 1e-18
 Identities = 89/103 (86%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctggatatttgtttgggaagcctatcatgatatgactctcataacacttggtgtttg 60
           |||||||||||||||||||||||||  |||||| |||||||| || | ||| || || ||
Sbjct: 110 tttctggatatttgtttgggaagcccttcatgacatgactcttatgatactcggggtgtg 51

                                                      
Query: 61  tgctcttgtatttctaatagttggcatagcaagagaaggatgg 103
           ||||||||| | | |||||||||||||||| | ||||||||||
Sbjct: 50  tgctcttgtgtctttaatagttggcatagcgacagaaggatgg 8


>KJC_c04248 
          Length = 613

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 56/64 (87%)
 Strand = Plus / Minus

                                                                       
Query: 312 ttggagaccaagttcctgctgatggactttttgtttcaggattttctgtattaattgatg 371
           |||||||||| ||||| || ||||||||||||||||| || |||||| | |||||| |||
Sbjct: 198 ttggagaccaggttccagcggatggactttttgtttctgggttttctttgttaattaatg 139

               
Query: 372 aatc 375
           ||||
Sbjct: 138 aatc 135