Jatropha Genome Database

JcCA0122251.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122251.10 - phase: 0 /partial
         (538 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02030                                                            609   e-174
KJC_c09096                                                             58   2e-08

>KJC_c02030 
          Length = 1305

 Score =  609 bits (307), Expect = e-174
 Identities = 314/315 (99%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                        
Query: 224  gagagggaaatcaggcctgccctcagtgcaaaactagatacaagcgcatcaaaggtagtc 283
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1298 gagagggaaatcaggcctgccctcagtgcaaaactagatacaagcgcatcaaaggtagtc 1239

                                                                        
Query: 284  ctagggttgatggtgatgaggaagaagatgatattgatgatttggagcatgagtttgatt 343
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1238 -tagggttgatggtgatgaggaagaagatgatattgatgatttggagcatgagtttgatt 1180

                                                                        
Query: 344  atggaaactttgatggcatgggcccagaacaagttgcagaagcaatgctctctgcacgcc 403
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 atggaaactttgatggcatgggcccagaacaagttgcagaagcaatgctctctgcacgcc 1120

                                                                        
Query: 404  ttaatactgggcgtgcttcttattctaatgccgctggaattcccacatcctcagaacttg 463
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 ttaatactgggcgtgcttcttattctaatgccgctggaattcccacatcctcagaacttg 1060

                                                                        
Query: 464  attcttctcctcttagctccaaaattcctcttttgacctacggcgaggaggatgctgaga 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 attcttctcctcttagctccaaaattcctcttttgacctacggcgaggaggatgctgaga 1000

                           
Query: 524  tttcttctgaccgac 538
            |||||||||||||||
Sbjct: 999  tttcttctgaccgac 985


>KJC_c09096 
          Length = 603

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 95/117 (81%)
 Strand = Plus / Minus

                                                                       
Query: 151 gatggagagccatttgttgcttgcaatgaatgtgctttccctgtgtgtaggccttgctat 210
           ||||||||||| |||||||||||| |||  ||||| || ||||| ||  |||| || |||
Sbjct: 434 gatggagagccctttgttgcttgccatgtttgtgcatttcctgtttgccggccatgttat 375

                                                                    
Query: 211 gagtatgagagaagagagggaaatcaggcctgccctcagtgcaaaactagatacaag 267
           ||||||||||| | ||| || |||||| | || || || |||||||| | |||||||
Sbjct: 374 gagtatgagaggaaagatggtaatcagtcttgtccgcaatgcaaaaccaaatacaag 318