Jatropha Genome Database

JcCA0122071.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122071.10 + phase: 0 
         (411 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05366                                                            743   0.0  

>KJC_c05366 
          Length = 530

 Score =  743 bits (375), Expect = 0.0
 Identities = 375/375 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgtcaaacgcaattgcctcgggtcaagatccggatccggtctcattccgaactgaccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  atgtcaaacgcaattgcctcgggtcaagatccggatccggtctcattccgaactgaccct 79

                                                                       
Query: 61  cacggttctggccaccctgacctcgatacaatcactgatcctcttcttcaaaacggctcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  cacggttctggccaccctgacctcgatacaatcactgatcctcttcttcaaaacggctcc 139

                                                                       
Query: 121 tatatcgaccctagtaacaacctccctaccagcggacagaccacaatcaaaccaaataaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tatatcgaccctagtaacaacctccctaccagcggacagaccacaatcaaaccaaataaa 199

                                                                       
Query: 181 gataatcaacaagcggctccgcagtcttctagctcagcgaatggcgtggaggccgagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 gataatcaacaagcggctccgcagtcttctagctcagcgaatggcgtggaggccgagaca 259

                                                                       
Query: 241 ccggttaaatctcggaggaaagtaccagttacgatggcgccagggtctgctgaatcggcg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ccggttaaatctcggaggaaagtaccagttacgatggcgccagggtctgctgaatcggcg 319

                                                                       
Query: 301 agttggttgccgccgggatggttggttgaagatcgggttaggacctcaggtgcaacagct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 agttggttgccgccgggatggttggttgaagatcgggttaggacctcaggtgcaacagct 379

                          
Query: 361 ggcacggtagataag 375
           |||||||||||||||
Sbjct: 380 ggcacggtagataag 394