Jatropha Genome Database

JcCA0122021.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0122021.10 - phase: 0 
         (333 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10012                                                            521   e-148

>KJC_c10012 
          Length = 498

 Score =  521 bits (263), Expect = e-148
 Identities = 277/279 (99%), Gaps = 2/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgtcttgtttactgccgcagtttaagtgccaaccagacactttctccatccatttcaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 454 atgtcttgtttactgccgcagtttaagtgccaaccagacactttctccatccatt-caga 396

                                                                       
Query: 61  actcactatcttcaaaattctaacttttgccagtctgcaaagagtagagagccagtctgt 120
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 395 actcactatcttcaaaattc-aacttttgccagtctgcaaagagtagagagccagtctgt 337

                                                                       
Query: 121 ttccgagcacaatgcattttgtccaccacatcaccttcaacatccactgcagttcttgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttccgagcacaatgcattttgtccaccacatcaccttcaacatccactgcagttcttgat 277

                                                                       
Query: 181 ctagagaagctgagattaccttcttttgaagctcatccagattcacttgtagcaaatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctagagaagctgagattaccttcttttgaagctcatccagattcacttgtagcaaatagt 217

                                                  
Query: 241 ccatggacatatgtgggttcaattggtcctcccaaagag 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ccatggacatatgtgggttcaattggtcctcccaaagag 178