Jatropha Genome Database

JcCA0118941.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0118941.10 - phase: 0 /partial
         (261 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05925                                                            436   e-122

>KJC_c05925 
          Length = 545

 Score =  436 bits (220), Expect = e-122
 Identities = 230/232 (99%), Gaps = 1/232 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggaagtgtgatctcaagcatcctcctggtgatgagatttaccgaagcggtacattgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 467 aggaagtgtgatctcaagcatcctcctggtgatgagatttaccgaagcg-tacattgtca 409

                                                                       
Query: 61  atgtttgaggttgatggcaaaaagaacaaagtttatgggcaaaacctttgttatctggca 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atgtttgaggttgatggaaaaaagaacaaagtttatgggcaaaacctttgttatctggca 349

                                                                       
Query: 121 aagctgtttcttgatcataagactctttattatgatgttgacctgtttctattctatgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aagctgtttcttgatcataagactctttattatgatgttgacctgtttctattctatgtt 289

                                                               
Query: 181 ttgtgtgaatgtgatgatcgaggatgtcacatggttggatatttttccaagg 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 ttgtgtgaatgtgatgatcgaggatgtcacatggttggatatttttccaagg 237