Jatropha Genome Database

JcCA0116741.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0116741.10 + phase: 0 
         (887 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04706                                                           1094   0.0  

>KJC_c04706 
          Length = 738

 Score = 1094 bits (552), Expect = 0.0
 Identities = 559/560 (99%), Gaps = 1/560 (0%)
 Strand = Plus / Plus

                                                                       
Query: 328 agaaaagagtggctcaagcaccatccttctttcgctgccggtgcgcgtgatagggttgtg 387
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agaaaagagtggctcaagcaccatccttctttcgctgccggtgcgcgtgatagggttgtg 60

                                                                       
Query: 388 atggttaccggatcgcagtctagcccgtgtaaaaaccccatcggagaccattttctttta 447
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atggttaccggatcgcagtctagcccgtgtaaaaaccccatcggagaccattttctttta 120

                                                                       
Query: 448 cgattttttaagaacaaagtggattactgtagaatccacggttatgacattttctacaac 507
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgattttttaagaacaaagtggattactgtagaatccacggttatgacattttctacaac 180

                                                                       
Query: 508 aacttgttgctccacccgaaaatgacaagtttctgggcgaaactgcctgtggtgagagcc 567
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aacttgttgctccacccgaaaatgacaagtttctgggcgaaactgcctgtggtgagagcc 240

                                                                       
Query: 568 gcgatgctggctcatccggaggcggagtggatctggtgggtggattccgatgccatgttc 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcgatgctggctcatccggaggcggagtggatctggtgggtggattccgatgccatgttc 300

                                                                       
Query: 628 accgacatggaattcaaactccccttgcgccgttacgattacaagaaccataacctggtg 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accgacatggaattcaaactccccttgcgccgttacgattacaagaaccataacctggtg 360

                                                                       
Query: 688 gttcacggctgggctaagctcatatatggagccaagagctggacggcgttaaacgccggc 747
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttcacggctgggctaagctcatatatggagccaagagctggacggcgttaaacgccggc 420

                                                                       
Query: 748 gttttcttgatcagaaactgtcaatggtcgatggatttcatagacacgtgggccagtatg 807
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 g-tttcttgatcagaaactgtcaatggtcgatggatttcatagacacgtgggccagtatg 479

                                                                       
Query: 808 ggtcccatgagcccggacgtcgaaaagtggggtcagattcaacggtcattattcaaagac 867
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ggtcccatgagcccggacgtcgaaaagtggggtcagattcaacggtcattattcaaagac 539

                               
Query: 868 aagcttttccctggttctga 887
           ||||||||||||||||||||
Sbjct: 540 aagcttttccctggttctga 559