Jatropha Genome Database
- JcCA0116261.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0116261.10 + phase: 0 /partial
(1512 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02113 208 3e-53
KJC_c01758 84 1e-15
KJC_c09892 56 3e-07
KJC_c04693 56 3e-07
>KJC_c02113
Length = 1117
Score = 208 bits (105), Expect = 3e-53
Identities = 468/589 (79%)
Strand = Plus / Plus
Query: 784 aggactatatttggagttgtagaagcttgtcattctttaggagttatgcatagagacctt 843
||||| ||| |||| ||||| || ||||| ||||||||||| || |||||| | || |||
Sbjct: 529 aggacaatagttggggttgttgaggcttgccattctttaggcgtgatgcatcgggatctt 588
Query: 844 aagcctgagaattttctttttattaatgatgaagaagattcgcctctcaaagcaattgat 903
|||||||||||||||||||| | ||| | | || || || | ||||||| |||||||
Sbjct: 589 aagcctgagaattttcttttcgtcaatcaacaggaggactcacttctcaaaacaattgac 648
Query: 904 tttggattatcagttttcttcaggcctggagaaagtttcagtgacgttgttggaagccca 963
|||||||||||| | ||||||| ||||||||||| || | ||| || ||||| || ||
Sbjct: 649 tttggattatcaatattcttcaagcctggagaaaaatttattgatgtggttggcagtcct 708
Query: 964 tactatgttgcgcctgaagttctaaaaaagcgttatggtcctgaagcagacgtttggagt 1023
||||||||||| || |||||||| |||||||| |||||||| |||||||| |||||||||
Sbjct: 709 tactatgttgctccagaagttctgaaaaagcgatatggtccagaagcagatgtttggagt 768
Query: 1024 gcaggagtcgtggtttacattctcttaagtggggttcccccattttgggctgaatctgag 1083
|| ||||| | ||||||||||| ||| |||| || ||||| |||||||| || | |||
Sbjct: 769 gctggagtaatcgtttacattctattatgtggagtgccccccttttgggcagagaccgag 828
Query: 1084 cagggcatattcgatcaagtactgaagggtgatttggatttcacatcagagccatggcct 1143
|| || || ||||| || || || | |||||| | || || | ||||| || ||||||
Sbjct: 829 caagggattttcgaccaggtcttgcatggtgatcttgacttttcttcagaaccttggcct 888
Query: 1144 aaaatctctgaaagtgccaaggatttagttagaagaatgcttgtgagagacccaaaaaag 1203
| ||||| ||| |||| |||||||| || || |||||||||| | |||| || | || |
Sbjct: 889 agtatctcagaaggtgctaaggatttggtgaggagaatgcttgcgcgagatcccagaagg 948
Query: 1204 cgaattacagcccatgaagttctctgtcacccttgggttcgagaagatggggtggctcca 1263
|| || || || ||||||||||| ||||||||||||| | |||||||| || |||||
Sbjct: 949 cggataactgcacatgaagttctacgtcacccttgggtacaggaagatggtgtagctcct 1008
Query: 1264 gataagcctcttgatcctgcaatcttaagcaggttaaaacatttttctgcaatgtacaag 1323
|| |||||||| ||| |||| | ||||| | | || || |||||||| ||| |||||
Sbjct: 1009 gacaagcctctggattctgctgtattaagtcgcatgaagcaattttctgctatgaacaag 1068
Query: 1324 ctaaagaaaatggcccttaggattattgcagagaacctttctgaagaag 1372
|| || ||||||| ||||| | |||||||||||||| ||||||||||
Sbjct: 1069 cttaaagaaatggctcttagagtaattgcagagaacctatctgaagaag 1117
>KJC_c01758
Length = 727
Score = 83.8 bits (42), Expect = 1e-15
Identities = 81/94 (86%)
Strand = Plus / Minus
Query: 585 agaagatgtagaggatgtgcgaagagaaattgaaataatgcaccatttgtcggggcattc 644
||||||||| |||||||| ||||| || ||| ||||||||||||||||| | || |||
Sbjct: 213 agaagatgttgaggatgttcgaagggagattcaaataatgcaccatttggcaggtcataa 154
Query: 645 gaatgttgttacgattaagggagcttatgaagat 678
|||| ||||||| |||||||| ||||||||||||
Sbjct: 153 gaatattgttaccattaagggtgcttatgaagat 120
>KJC_c09892
Length = 513
Score = 56.0 bits (28), Expect = 3e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 794 ttggagttgtagaagcttgtcattctttaggagttatgcatagagaccttaagcctgaga 853
|||||||||| || |||| |||||| |||| || ||||||||||| ||||||||||| |
Sbjct: 455 ttggagttgtggagacttgccattctctaggtgtcatgcatagagatcttaagcctgaaa 396
Query: 854 attt 857
||||
Sbjct: 395 attt 392
>KJC_c04693
Length = 762
Score = 56.0 bits (28), Expect = 3e-07
Identities = 55/64 (85%)
Strand = Plus / Minus
Query: 794 ttggagttgtagaagcttgtcattctttaggagttatgcatagagaccttaagcctgaga 853
|||||||||| || |||| |||||| |||| || ||||||||||| ||||||||||| |
Sbjct: 626 ttggagttgtggagacttgccattctctaggtgtcatgcatagagatcttaagcctgaaa 567
Query: 854 attt 857
||||
Sbjct: 566 attt 563