Jatropha Genome Database

JcCA0094041.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0094041.10 + phase: 0 /pseudo
         (1465 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04580                                                             60   2e-08

>KJC_c04580 
          Length = 623

 Score = 60.0 bits (30), Expect = 2e-08
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                       
Query: 164 ctttatggcaactatccaagaaatatggtcctgtgatgcttctgcaatttggtcgagttc 223
           |||| |||||||| || ||||||||||| ||||| |||||||| ||||||||| | || |
Sbjct: 275 ctttctggcaactttcgaagaaatatggccctgttatgcttctccaatttggtagtgtgc 334

                                                 
Query: 224 ctacagttattatctcctctgcagaagctgcaaaagag 261
           || | ||||| || ||||| || ||||| ||| |||||
Sbjct: 335 ctgctgttataatatcctcagctgaagcagcagaagag 372