Jatropha Genome Database

JcCA0088631.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0088631.10 - phase: 1 /pseudo/partial
         (812 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05896                                                             56   1e-07

>KJC_c05896 
          Length = 907

 Score = 56.0 bits (28), Expect = 1e-07
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 89  tttttctccctatggtgagtattggagacaagttcgaaagatttgtgttcttgaactttt 148
           ||||| ||| |||||||||||||||||||||||    ||| |||| ||||||||||| ||
Sbjct: 267 tttttgtccatatggtgagtattggagacaagtgaagaaggtttgcgttcttgaactctt 326

                               
Query: 149 aagcctgagaagagtgcaat 168
            |||| || |||||| ||||
Sbjct: 327 gagccagaaaagagtacaat 346