Jatropha Genome Database

JcCA0081341.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0081341.20 - phase: 0 /pseudo/partial
         (312 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00360                                                             94   2e-19

>KJC_c00360 
          Length = 957

 Score = 93.7 bits (47), Expect = 2e-19
 Identities = 223/282 (79%), Gaps = 6/282 (2%)
 Strand = Plus / Minus

                                                                       
Query: 37  acattttgccaattcttcttcagtagtgaaacgaggaaattgacactcaattggacattc 96
           ||||||||||| ||||||||||  |  ||||| ||||||||||| |||| ||| ||||| 
Sbjct: 657 acattttgccagttcttcttcaacaaggaaacaaggaaattgacgctcatttgcacattt 598

                                                                       
Query: 97  tggaaaatctgcttctcctccattccacagtgccccacagcaacacccatgcaaagaacc 156
           ||||| |  ||||||||||||||  ||||||  || |||||||| |||||||| || || 
Sbjct: 597 tggaagacttgcttctcctccatagcacagttgccaacagcaactcccatgcagagcact 538

                                                                       
Query: 157 ttcttaagctggaacttcactatagcttttgtctcattaaccttatcttccagagaatcc 216
           ||||| |  |||||||||||| | || ||||| ||||| || |||   || || || |||
Sbjct: 537 ttcttcaattggaacttcactgttgcctttgtttcattcactttagactctagggactcc 478

                                                                       
Query: 217 tgatgggcaaccaag------aacttgcccgctttgttaaggccaggacccaaaagacga 270
           |||||||  || | |      || || || || ||||| || ||||| |||| |||||||
Sbjct: 477 tgatgggtcacaagggtaggaaatttacctgccttgttgagaccagggcccagaagacga 418

                                                     
Query: 271 ggaatctgcttgatgacagattcagaagctaaaaatgcatgg 312
           ||||||||||||||||||||||| ||||| || || ||||||
Sbjct: 417 ggaatctgcttgatgacagattctgaagccaagaaggcatgg 376