Jatropha Genome Database

JcCA0081341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0081341.10 + phase: 2 /partial
         (211 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_s19024                                                            123   2e-28
KJC_c00360                                                            123   2e-28

>KJC_s19024 
          Length = 338

 Score =  123 bits (62), Expect = 2e-28
 Identities = 116/134 (86%)
 Strand = Plus / Minus

                                                                       
Query: 74  tttactgggacaattgagcttcagattggactgaagaactatgatccccaaaaagacaag 133
           ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| || |||
Sbjct: 138 tttactgagacaattgagctccagattggactgaagaactatgatcctcaaaaggataag 79

                                                                       
Query: 134 agatccagcggctctgttaagcttcctcacattcctcgccccaagatgaaaatctgcatg 193
            | | ||| |||||||| ||| | |||||||| ||||| || |||||||| || ||||||
Sbjct: 78  cgtttcagtggctctgtgaagttgcctcacatccctcgtcctaagatgaagatttgcatg 19

                         
Query: 194 cttggtgatgctca 207
           ||||| ||||||||
Sbjct: 18  cttggagatgctca 5


>KJC_c00360 
          Length = 957

 Score =  123 bits (62), Expect = 2e-28
 Identities = 116/134 (86%)
 Strand = Plus / Plus

                                                                       
Query: 74  tttactgggacaattgagcttcagattggactgaagaactatgatccccaaaaagacaag 133
           ||||||| |||||||||||| |||||||||||||||||||||||||| ||||| || |||
Sbjct: 137 tttactgagacaattgagctccagattggactgaagaactatgatcctcaaaaggataag 196

                                                                       
Query: 134 agatccagcggctctgttaagcttcctcacattcctcgccccaagatgaaaatctgcatg 193
            | | ||| |||||||| ||| | |||||||| ||||| || |||||||| || ||||||
Sbjct: 197 cgtttcagtggctctgtgaagttgcctcacatccctcgtcctaagatgaagatttgcatg 256

                         
Query: 194 cttggtgatgctca 207
           ||||| ||||||||
Sbjct: 257 cttggagatgctca 270