Jatropha Genome Database

JcCA0081131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0081131.20 + phase: 0 
         (762 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12150                                                           1023   0.0  

>KJC_c12150 
          Length = 538

 Score = 1023 bits (516), Expect = 0.0
 Identities = 537/540 (99%), Gaps = 3/540 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  ccaaatctaagaacaatatcttgaaatttctacctaaagcagcttctgcagtttacttcc 73
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccaaatctaagaacaatatcttgaaatttctacctaaagcagcttctgcagtttacttcc 60

                                                                       
Query: 74  ataatcctcctttcagtcctaatagagatagaagatcggataataattactgccacaggc 133
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ataatcctcctttcagtcctaatagagatagaagatcggataataattactgccacaggc 120

                                                                       
Query: 134 ttaaagctcatgtcggtaaaggattttccggtccatttgtttctatgattcccgatgaag 193
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 121 ttaaagctcatgtcggtaaaggattt-ccggtccatttgtttctatgattcccgatgaag 179

                                                                       
Query: 194 ttcgtcggaagcccaagaatggaagttttgagacccaagaacccacctcgcctaaggtgt 253
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 ttcgtcggaagcccaagaatggaagttttgagacccaagaacccacctcgcctaaggtgt 239

                                                                       
Query: 254 catgcattggccaaatcaagcacaagaagaagatggtgaataagacgaagcgaacttctc 313
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 catgcattggccaaatcaagcacaagaagaagatggtgaataagacgaagcgaacttctc 299

                                                                       
Query: 314 ctcctaaagaaataaaggctgtatcttctccacgggacgtgaaaaaacatgcatccaagt 373
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctcctaaag-aataaaggctgtatcttctccacgggacgtgaaaaaacatgcatccaagt 358

                                                                       
Query: 374 ttaagaggctgtttagtattagtgc-aaaaccaactgctggaaggagatctgatgcttct 432
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 359 ttaagaggctgtttagtattagtgcaaaaaccaactgctggaaggagatctgatgcttct 418

                                                                       
Query: 433 atctatgataggccaccactttctgatagagcgccttctttgggtcaaatgaagcggttt 492
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 atctatgataggccaccactttctgatagagcgccttctttgggtcaaatgaagcggttt 478

                                                                       
Query: 493 gcgagcggtcgcgatactttttcgaattttgattggacggctcagattacaccggtggaa 552
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 gcgagcggtcgcgatactttttcgaattttgattggacggctcagattacaccggtggaa 538